HsaINT0185866 @ hg19
Intron Retention
Gene
ENSG00000189298 | ZKSCAN3
Description
zinc finger with KRAB and SCAN domains 3 [Source:HGNC Symbol;Acc:13853]
Coordinates
chr6:28317691-28327765:+
Coord C1 exon
chr6:28317691-28317844
Coord A exon
chr6:28317845-28327301
Coord C2 exon
chr6:28327302-28327765
Length
9457 bp
Sequences
Splice sites
5' ss Seq
GAGGTGCGT
5' ss Score
8.42
3' ss Seq
AATGATTTCCCACCTTTCAGGGA
3' ss Score
8.96
Exon sequences
Seq C1 exon
AGTGGCTTCTGTGCCCCGCCCTGCGGGTGGTTTGCTAGTTTCAAGCACTTTGTGAGTATGGGGTGAATCGGCGTCGGCCTTCCACTGTGGGGTTAAATCTCATCCCGCGGCTCTCCTCCTGTCGGTCCTGCAGTTCTTTTGTCCCCGGGTAGAG
Seq A exon
GTGCGTTTGCAGGAGTATGTGTGTGTGTGTGTGTGTGTGTGTGTTTGTGGAGAGAGGCCCTTCCCTCCCCAGTTCCTGCAGCCTCGGCTCCCAAGGAGGGAGACCCCTGCGAGAAGCCGTGGGGGAGGGAAGGGCGCTCTGCGGCGGAATGAAGTGGTCCTCGGCGTTCCTGCGTAGAGCCCAATATGGGTGTCCCTTGTTTAGGGCCGTTACCGAGTGTCCGGGTCGGTTCTTGAGGGTATTTGGAGACGGGATGCATGGGTCACATAGACAAGCCTCGAGAATGGGAGCCGTTACATTTTTGCACTGCCTGGTAACAAGGTCAGTTTCAAGGTCTTTAAATTATTCTGTGGTACTGGCCAAGAGCCAGAACGTTGGAGTCAGATTACCTGGTTCAAATCCTGCCTCTGCCACTTACTGGCTGTGTGACTTTTCACTAGTTCCTAAGCTCTCTCTCTGCCTCATTTTACTATTTTGTAAAATGGGGATAATATTCCCTAACTCACTGGGTTGTTGTGAGGATTGAATGCATTCGTATGGGTAAGGTGCAGAGTAAGCATGATTTAAAGATTTGCTTTTATTAGTGGTACTATTATTATTTATAACTATGATGACACATTAGTGACTGGCTTTTGTACGGTTGCTTTCAATTTTACTGTCATTCATCAATTCACTTTGTAATGGATGATTTCTATATTTTAGGAGGGAAAAATAAGATACTCTGAAAAAGAGCCTATCCCAAAGCAAAGACCAAAACTGGTTTGTGTTGGACGTTGTGATACTCAAACTCTCAAAGGCTTTAAGACTCGGGGGTACCTTTTCCTTGGCTGGAGATTAGGAGGAACAATAGAAGTTTTTAATAGTGAAAAAGGACTAGGACCCCTGGTTTTTGCAAAAATCTGATGTCCTGCTTAGTGCTGGAGATCCACCAGTTTTCGAGCTTCCAGGAACGCCCTAGCCTGAAACTGGCTTCATACTAACACCCTTCATTTCAACCCAACTTTTACAGGGTTAGCTCTTTCATAGACTTGTAACTCTTTTCTGTTAATGAGAAACTTTCCTTTCCTTATCTTCAGTATATTTACTGATTTGATAAATACTTTGTGTTGGCAACCAATTTCCCAATCTTGTGCCTTCCCACTGTGATCAGTTTGGCTCAGATCCAAGTAGGGGCCAGGTAGTGAAACCTAAATGGAGTTTGTGGAATAAATGATATAAATGTATCAGTGTTGTTTTCCTGCCATAGACTTCCTCCCTTCCCCACCGTGGACACCCTCCTCATTCCACTTGGGCTCCAGATTCACTCTGGGTTGGGCTGTGGCTCTCTCTCGCCTTCCTTGACCCTACCTTAATGCTTTTTGGCTGTATTATTCAGGAAGGAAAGAAGTTAGGACATTGTTTAATTTTCTAAAATTTTGGAGAGAAATTTAAACACATTTAATTGTAGAGAGAATGTTACAATGAACACCAATATAACCATGACTCAGCTTCAGCCATCATCTTTTGGTCATTTTCTTTCATTCTTCTTTTCCCTCCTTTCCACTCTCTTTCCTTCCCTTCTCCTCCTCCTTCCCTTTTGTCTCCCTCCTTCCCTTTTACTTCCTCCCTCTTTCCCTCTCTCCTTTCTTTCCCTCTCCCTCCTTTCTTTGTCTTCCTTTCCTTCCCTCCCTCTCCCCCTCTTTATCTCTTTTTTTTCCTCATTTCGTCCCTCTCTTCTCTTTCATTTTATAGCAAATTGCAGATGGAAACATTTTAGTTCACTCACAAGTACAAGTACTTCAGTGTCAATTTCTTATATACAGGGACTTTTATCTTAATATAATCATAGTATCATGATCACACGCAAAAAAATTGACAATAATTCCTTGATATCATTATCTTGATTTTCAAATAATTGTCTCAAATATTTCTAGAGTTTTTTTTTTTTACAGTCTTTTTACAGTTGTTGTTTTCAGTGGGGTCCGAATATGGTTCACCATTTGCATTTATTTGATAAGTCTGTTCAGTCTTCTAATCTATGACAGTTCCCATTCCCTCCCACTCCTTTTGGTAAAAATGCCATTTATTTGTTGAGGAACTTGAACCTTCTGTTTTATAAAATGCCTCACATTCTGGATTTGGTCGATTGCTTCTTTTTAGTATCTTTAACTTATTAGATCTCAAACTCAGCTGCACATCAGAATGACCTAGAAAGTTTTAAAAGTTATTGATGTATTAAAAGTCCCACCCCCAGAGAGTGATTTAATTGATTTTTTTTTCATTGCAATCTCCATCTCCCAGGCTCAAGTGATTCTCATGCAACAGCCTCCCAAGTAGCTGGGATTACAGGTGTGTACCACCACACCCAGCTAATTTTTGTATTTTCAGTAGAGACAGGGTTTCGTCATATGGGCCAGGCTGTTCTTGAACTCCTGACCCCAGGAAATCTGCCTCAGCCTCCCAAAGTGCTGGGATTACAGGTGTGAGCCACTGCACCCAGGCTGATTGATCTTGATTGTACCCAAGGCATTAGGATGTTTTAAAAGCTCCCCAGTGATTCTAATATGTAACAAAGTTTGAAAGCCTTTAATGTAATTTGCTCCTATATTTCACCTGTACACTGGTATTTGGATCTAAAGACTAGATTAGATTTAGGCTCACTTATTTTGGTATTATTAGCTCATGTAGGAGTACCCCAGATCTCTTGTGGCAGCTTATTAGGAGGAAGTATTTTCTGGTACTTTTGATTTGTGACAATCAATGGCTTCTCTCAGTTTCCTAATTTCCTTCTATTCCCTACCATCCTTTGAACTGTAGAGAGTTGGACTGAGGAATAGAGGTTCAGGAAGACACGGACTTGGAATTGTTTTTCCCTTTGTAACCTCTACCAGCCTTACATTTCTTTTCTTTTCTTTTTCTTTTTTTTTTTTTTTTTGAGGCAGAGTCTTGCTCTGTTGCCAGGCTGGAGTGCAGGTGCAGTGGTGCGATCTTGGCTCATTGCAACCTCCGCCTTCCGGGTTCAAGCGATTCTCCTGCCTCAGCCTCCCAAGTAGCTGAGACTATAGGCGCATGCCATCACGCCCAGCTAATTTTTGTATTTTTAGTAGAGACGGGGTTTCACCATGTTGGCCAGGATGGTCTCGATCTCTTGACCTCATGATGTGCCCACCTCAGCCTCCCAAAGTGTTGGGATTACAGGCGTGAGCCACTGCGCCCAGCCCAGCCTTACATTTTCTAGCCTCTCCATTCCACTGAGTAAAGAGGGACTTACTGACATCCGAGTCCAGTCAAATAATTTTGCAGTCACTCACTTCTAGTTTAAAATCTAGTCCCAGCTGGTTCACAGGAATCTCAGGTTTCCCTTCCCTCTTAGATCAGGCCCAGGTCTCATGGCTTCTGGGATAGGCTCTCTTTCAGAATATCTTACTTTTCCCTCCTAAAATACAGAAATCATCCATTACAAAGTGATGACTCTGACGAAACCTGATGGCTGGTGCTGTTGTTTCTAGATAATACCATACTGAGGAAGGAGTAGATTAGGAAGCAAGAAAATCACTTTGATTTGGGGCATATTGAATTGGATTTGTTTGCAAGATTTCCATATAGGACCGTCTGGGAGGCAGCTCAGGATAGGGATCAGGAGTCTACAGCCTAGAAATAGAAGTTAAAACCTTGCGAGTGATTAAAGATAGTTCTGGGGAAGACTGTGGATAGAGAAAAGAAAAGGTCAAGAACAGAACCACCAGGCCTACTCTTATTTAAAAAAAGAAAGACCAGTGAATTATACTATTAGCCAACATGTATATGGTACTTACCACTGTCATGCCAAGTGTCAGGTTCCAGCCCATACTGAGGTCCGAGGGGAGTTGTTGGATGGGTGGCAGGTAGTTGAAAGAACACTCGGGGCTGTAGGCAGGTAAAATATGATTTTATTCAGCAGCAGCTGCTGCAGCTCTCACACTGTCTGCCTCTGTCTCGGCTGCCTCCTCCGACCGCAGCCCTTCTCAGCAAACGGCTCTGTGGCTCCTGCCGCTCCCACACTTACAGCTGTACTCCTTGGCATGCTTGTTAATTCCTGGCTCACCTCTGTCTGTCTGCAAGATGGCCAGTTCTCTCTTACAGGGTCAGCAGTTTTTCTCTCTCTCTCTGGGCACAAGTCCTATGTACAGTGTCAGCAGGGCAATTATACCATTTACAGACAATAGTGGCTGTAAGCCAAGTATGAGCTTACACAAACAGGTTATATAACAAGTGGAGTGGTGCGCCTGCGTTCCAAACTCGCTGAGTCACGCTGGCCTGCATATCTGCCTCGGCCTATTCTTGACCAAAGCACATCCATTTACCTTACACTCCACCCCCTTGGCCGAGGGAGACATAGGTTTTTGGGTACACAGGCCCAATATATAGGTTTGGCACACAGGCCTGACATATAAACTTTGGGCACCCAGGGCTGATACACACAGGCTTGACACATAAGTCTGACACATAGGCTCTGGGCACACAGGCCCAATGTATACATAGAGGCTTGACACATAAGCCTGACACATAAGCTCTGGGCACTTGGGCCACAGTAATACAGGGAGCAATAATTTCAGGTTATAGTGAGCAATCACTACATGGTGATGTTACCCCAATGTTGCTTTATATATTAATCCAGGGTTTTTGCTTCCCTACCTTTAGGGTGTTGGGGCGGGCAACAACAGGTTACTGTTTGTCCCCATACCTGGTTGGAGGAAGTCATCCTTTCTCTCATAGATCTGGCCACATGGCCTGGCCCTACATGGGTCGGTGACTAGCCACTTCTGTAACTTCTAGGTAGTTAGCCACAAGGTTAAGCCTTGATAAACTGCCCAGCTATCAGTGCAGATTACGTGTCACCTTCTTGGTGATCACCATTTACATTGCCCTGAGTTCAGTTTATTAGCTACTTTGTCCACACCTGGTATCAAACCATAGGGTGTTGGTACTAGGCTGGGCTGCAACAGCAGTCCAGGTAGCAGTAGCACCCTGGCTAGACCTATCTGTGTACCATGCCCCATTGGGAATGCGGGAATGCCCTTCCTTAAAAGGTGAAGGCTCAGGATCTAGGGGTGCCTCAGGTCCCATAACCTTATCTTGCATTAGGACTGTAGGTCCTAAGACTTCCTGTAATTGTGCTTCTAAGGGACTTGAGTTAGCATACTTTGCTGTTCCAAGTAGGCTTAAGCACCCCACTTTACAAAAGTGGATGTCTGTGCCATCCCAGTGTGTGGGTTGTTACCCATGAGCATACCCACCCTGCTATTGGGTAAGTCATGCGCGCGACGACTGTAGCCCATCCTGCCAGGCTGTCACGAGTCTAAAGGGCAGCATATGCAGTTAGTAACTGCTTCTCTGTCGAGGAATACTGGAGCTCAGCTCCCTTCCAAAGTTGGGACCAAAAGTCTACTGGCATTCTAAAGAGCTCTGTGTGATGCCATAAGCCCCAGTCAAAACTATCTGGTCACATGCACATCAAGTTTAAATGGGTGCCCCGATCAGCTACCCATAGGGCTTGTGCCTGCTGAATAGCCTGTTTGGCTGCCAGGAAGGTGGTTTCAGCCGCATCATCCCAATTCCAGGCAAGAGGCTGCGTTGCTGCTTCTAAATCTGCAAGAGAATCAGAGGTTAATATAACATCATTAATAAGATCATGACATATGTTGGGGCTATGCATATATCCCTGCAGCAATACTGTGAAAGTCCATTGTCACCCTCCCACGAAGGCAAAGTGTTCCTGGCTCTCTGGAGCAATGTCGATTAAGAGGAATGCATTGGCCAAGTCCACCACACAGTGGCACCATCCCAGTTCTGTTGTCAAGTGGCCTATCAAATCCATGATAGACGGCACAGCTGCCAAGCCGTGCAAAACATCCACCCACAGCCTGTCCTCAGGCATGGGAGAGACATCCACAGTGCATAAGCAGGGAGCTAAGCGGCCGATGCCGAGGTCCAAAGATACAGGTTTCACTTTCACTGACCAGCTTTCATAACCGTCAATAAATGCAGCTCTGCCCGGAAACTTATTCAGGTTTAGGGACCAGTGGCTTGCCGAGTCCACATATTGCCTTTGGTTGTCCGGTGTCCCCCCAAGCCTGGCACCTGGGTCAGTTCCCAATCAAACAGGAAAGACTTTACATTTCTGCCTGACTGCAGCAGGTAATCTTTGAGCTGGAACGCTCCGGCGGGACCTAGTTGCCCAGCAATGTCCTTTTCCCGAATGACTTGCACTAAGTCTATATACAACTGCCATCTACTGACAGTTTCTGGTATTTCACCGGCATCAGACCACACTGTAATTAAAGAAGCCAGCTTTTCCATCTCAGAGGGGGAGCAGGAAATGGATCAGCTCCTTTGTCCCGGAGAGACAGAATTCAGGCAGGGAGTCTCCCCCAAATGCTGCTGGCACTGCTTGCCTAACTCCCACAACTCAGTGGGGGGTACAAGCACTATAAGAAGTGTGCTTCACTATGGTAGGGGGTCTCTAGGCCCACCCTTGGGGCCCAGTGGCTGTTCATGCTCTATTTTCTGGCAGACCACTGGGTGAGCCTGTAATGGAGGTTCGTCCTCCTCCCTGCACTGCGTCCAGCAGGGACTGGGCATGCCCTTCCAGCAGCACAGTCACAAATGCCCATCTGACTCTGTTGGCAAAGGCACACTCCTTCTCGGTCCTGTGCATTTCCAGGTGCTTCAGCACCTTCTCCACACTCGTGGAGGGCCTGTCCACTGCCGCCCATGTTTCCACCAGAGCCCATCCTTGCAGCACGGCTGCCACTGGGTGCCACAGCTCATGCTGTGGCTGCATAGCCGCTCCGGGAGCCTGGGGGCTGAAGACCCACTCACCTCATCTTGCTCACTATGCCAAATGTCAGGTTAGAGCCCCAGCTGAGGTCCAAGGGGAGTGGGTGGATGGGGGGCAGGGAGCTGGAAGAACACTCGAGAGACAGCAGGTAGATGGGACATGGCTTTACTCAGCAGCTCTTTCACAGTGTCAGTGCCACATTTATACACCTCACAAACAGTAGTATCTTAGAGCCAGGTGATGAGCCTCCCCAGATTATGGCTACATAACTGTGATTATATAATGCACGGAATTGTGTGCGTGCGCTCCAATCCTGCTGAGTCATGCAGGATGTTTACCTCGGCCTATGCCTGCTTCGCTGCAGCACAGCCATGTTCCTTACAACCACACACCAGGCACTGTTCTAAGAGTTTTATACACTCACTTACTTAATGCTTACAATGGCCCTATCTGCTATCACTATCCCTATTACAGATAAGGAGAGGGAGGCACAGAGCTAGTAGGTAGTAAAGCCAGGATTTTGACGACCTCAGGAAACCTGGCTTCAGAACACTTAACCAGATTATGATGGGAGCTGAGAAGAACCAGGAAGGAGGAAAGCAGGAGAAAGCAAGATCCTTGAAGTAAGGACAAGTGAGTTTTTGGAAGTGGACAGTATCCTCAGCCCAGTTGCCTGAGAAGAGGCCATGGAAAATGGGAATTGAGGGAAGCACCTTTGGTTCCTTCTGCATGCGAAATCTTAGTGGTCTTGGCAGTTGCAGCCTACAGTGTGTGGAAGGCTTAGTGGGAGGTGAGGACTAGAATCAGGGACTAAGGACTTTCTTTCAAGAAGTTCAGTCTTGAAGGGGAAGAAAGAAAGTGGCAGATTGAGGAGGTGGCAAAGACCAGGGGCAGCCTATGCTCTCTCCAGGGGAAGGGCTTGGTGATGTTTTCGGCTGCCTTGATGTTTCTGAGAGAAACTGAAGGGCCTTCAGCCCAAAGATCCGAAGAGCCTGCAGAAATCCTTCTTTCAGCTGAATTTTAATGTGAATGTTATGCCAGTTTTTTGGGCAAGCCTCACTTCAGATATAATTGAGGGTCTCACTAGCAGGCAGCCAAGGTTTAATTCAGTTCTATTTCTTTTGGTCCAGGGCCTTCTGTCTTTTCTTTCTTCTTCCCCTTACTACAGTACCTTGACCACAGATAAGACCTGGTACAGCCATCCTTCACTATCTGTGGGGGATTCATTCCGGGATCCCCAATGATACCAAAATTTGTGGATGCTCAAGTCTTACATAAAATGGCATATAGTATTTTCCTATAACCTACACACATCCTCCTGTATGTTTTTTTTAAGAGATGGAGTCTCTGCACTGTTGCCTAGGCTGGAGTACAGAGGCACAATCATAGCTTACTGCATCCTTGAACTCCTGGGCTCAGGTGATCCTCCTGCCTCTTCCTCCTGAGTAGCTGGGACTGCAGTAGTGCGGCACCAGGCTCAACTTCTCTTGTACACTTTAAATCATCTCTAGATTACTTATAAACCAAATACAATGTAAATGTTTTGTAAACACTTTTTATATTGTATTTTTATTTGTATTTTTTAATTGTTGTTTTTGTTATTTTTTTTTCCCAGATATTTTCCAGCTGTGGTTGGTTGAATCTCTCAATGCAGAACCCACAGATATAGAATCAACTGTATTAGTTTTCTATTGCTGTATAACATTTACCTCAAATTTATCAGCTTAAAACAAAATCTGGGCTGCGCGCAGTGGCTCATGTGTTTAATCCCAGCACTTTGGGAGGCCGAGGCAGATCTTTTGAGGTCAGGAGTTCGAGATCAGCCTGGCCAACATGGTGAAACCCCAGCTCTACTAAAAATACAAAAATTAGCTGGGCATGGTGGTGCACACCTATAATCCCAGCTTCTTGGGAGGCTGAGGCAGAAGAATCTTTTGAACATGGGAGGTGGAGGTTGCAGCAAGCCGAGATCATGCCACTGCACTCCAGTCTGGGTGACAGGGCAAGACTCTGTCTCAAAACAAACAAATAAGAAAAAAAAAAAAAAAAAAAAAAAAATCAGCTTATTTGTTCCAGTTCTATAGGTCAGAAGGCCAGGCAGGCTCAGCTGAGTTCAATATTAGGGTCTTCCCAGGCCAAAGCCAAGGTGTTGGTAGGGCTGGGCTATTATCTGGAGGCTCTGAGAGGAATCTACTTATGAGGTCATTGAGGTTGTCAGTAGAATTCAGCTCTTTGGGATCAGTCCAGTCAGTCTGGACTTGCTATCTCATATTGAAAGTCCTGAGGATTAGGGCAGGAAATCATTAGGGTCATCTTAGAATTTAGACAACCACAGACCTGGTTGGTAATGGGATAACTCTGAGCAAGTCACTGAGAGGAGCTTCCTAGAGAGTCCAGGAAGTGCCCTGGATCCTCACCAATTTCAGTTTTTTTCCTGATTAGTCAGGGGCTTGGGGGTGTCCAGGATCACTCCAGGACATCCTTTGGGAACCTTACTATGGGATTCAGGTTTGGGGTGGTGTAGAGGATTAAGCTGCAGAACCACTGAACATGGAGAAATTTCTGCAGCAGTTCCCCAGAGATGTCTCTGGGCTCCTGGGCAGGAGAGAAGGGACTACTTGCAAGTTTACTGGTTAATAATGATTTCCCACCTTTCAG
Seq C2 exon
GGATCTTCTGCAGAAATAGCGCTGGAAGCTAGAGTGAGGCCTGAGTACTGCCTTGGCCTAGGATGGCTAGAGAATTAAGTGAAAGCACAGCCCTGGATGCCCAGTCTACAGAAGACCAGATGGAGCTTCTGGTCATAAAGGTGGAGGAAGAAGAAGCCGGTTTTCCCAGTAGCCCAGATCTGGGTTCTGAGGGCTCCCGCGAGCGCTTCCGAGGCTTCCGCTACCCGGAGGCTGCAGGCCCCCGCGAGGCGCTGAGTCGGCTCCGAGAGCTCTGCCGACAGTGGCTGCAGCCTGAGATGCACAGCAAGGAGCAGATCCTGGAGCTGCTGGTGCTGGAGCAGTTCCTGACCATCCTGCCGGGGAATCTGCAGAGCTGGGTGCGGGAGCAGCATCCAGAGAGCGGGGAGGAGGTGGTGGTGCTATTGGAGTATTTGGAGAGGCAGCTGGATGAGCCGGCGCCGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000189298-ZKSCAN3:NM_024493:1
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.243
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0202312=SCAN=PU(97.9=70.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)