HsaINT0185866 @ hg38
Intron Retention
Gene
ENSG00000189298 | ZKSCAN3
Description
zinc finger with KRAB and SCAN domains 3 [Source:HGNC Symbol;Acc:HGNC:13853]
Coordinates
chr6:28349950-28350388:+
Coord C1 exon
chr6:28349950-28350067
Coord A exon
chr6:28350068-28350271
Coord C2 exon
chr6:28350272-28350388
Length
204 bp
Sequences
Splice sites
5' ss Seq
GAGGTGCGT
5' ss Score
8.42
3' ss Seq
TATGGGTGTCCCTTGTTTAGGGC
3' ss Score
9.12
Exon sequences
Seq C1 exon
AGTTTCAAGCACTTTGTGAGTATGGGGTGAATCGGCGTCGGCCTTCCACTGTGGGGTTAAATCTCATCCCGCGGCTCTCCTCCTGTCGGTCCTGCAGTTCTTTTGTCCCCGGGTAGAG
Seq A exon
GTGCGTTTGCAGGAGTATGTGTGTGTGTGTGTGTGTGTGTGTGTTTGTGGAGAGAGGCCCTTCCCTCCCCAGTTCCTGCAGCCTCGGCTCCCAAGGAGGGAGACCCCTGCGAGAAGCCGTGGGGGAGGGAAGGGCGCTCTGCGGCGGAATGAAGTGGTCCTCGGCGTTCCTGCGTAGAGCCCAATATGGGTGTCCCTTGTTTAG
Seq C2 exon
GGCCGTTACCGAGTGTCCGGGTCGGTTCTTGAGGGTATTTGGAGACGGGATGCATGGGTCACATAGACAAGCCTCGAGAATGGGAGCCGTTACATTTTTGCACTGCCTGGTAACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000189298:ENST00000377255:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCACTTTGTGAGTATGGGGTG
R:
CTTGTTACCAGGCAGTGCAAA
Band lengths:
228-432
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains