HsaEX0072826 @ hg38
Exon Skipping
Gene
ENSG00000189298 | ZKSCAN3
Description
zinc finger with KRAB and SCAN domains 3 [Source:HGNC Symbol;Acc:HGNC:13853]
Coordinates
chr6:28349950-28361471:+
Coord C1 exon
chr6:28349950-28350067
Coord A exon
chr6:28359525-28359988
Coord C2 exon
chr6:28361324-28361471
Length
464 bp
Sequences
Splice sites
3' ss Seq
AATGATTTCCCACCTTTCAGGGA
3' ss Score
8.96
5' ss Seq
CAGGTAGAA
5' ss Score
6.68
Exon sequences
Seq C1 exon
AGTTTCAAGCACTTTGTGAGTATGGGGTGAATCGGCGTCGGCCTTCCACTGTGGGGTTAAATCTCATCCCGCGGCTCTCCTCCTGTCGGTCCTGCAGTTCTTTTGTCCCCGGGTAGAG
Seq A exon
GGATCTTCTGCAGAAATAGCGCTGGAAGCTAGAGTGAGGCCTGAGTACTGCCTTGGCCTAGGATGGCTAGAGAATTAAGTGAAAGCACAGCCCTGGATGCCCAGTCTACAGAAGACCAGATGGAGCTTCTGGTCATAAAGGTGGAGGAAGAAGAAGCCGGTTTTCCCAGTAGCCCAGATCTGGGTTCTGAGGGCTCCCGCGAGCGCTTCCGAGGCTTCCGCTACCCGGAGGCTGCAGGCCCCCGCGAGGCGCTGAGTCGGCTCCGAGAGCTCTGCCGACAGTGGCTGCAGCCTGAGATGCACAGCAAGGAGCAGATCCTGGAGCTGCTGGTGCTGGAGCAGTTCCTGACCATCCTGCCGGGGAATCTGCAGAGCTGGGTGCGGGAGCAGCATCCAGAGAGCGGGGAGGAGGTGGTGGTGCTATTGGAGTATTTGGAGAGGCAGCTGGATGAGCCGGCGCCGCAG
Seq C2 exon
GTTTCAGGTGTTGACCAGGGGCAAGAACTGCTCTGTTGCAAGATGGCACTATTGACACCAGCCCCAGGGTCACAAAGTAGCCAATTTCAGCTAATGAAGGCTCTGCTCAAGCATGAATCTGTGGGATCCCAGCCTTTACAAGATAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000189298_MULTIEX1-2/4=C1-4
Average complexity
C1*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. ATG)
Show structural model
Features
Disorder rate (Iupred):
C1=NA A=0.241 C2=0.154
Domain overlap (PFAM):
C1:
NA
A:
PF0202312=SCAN=PU(97.9=70.1)
C2:
PF0202312=SCAN=PD(0.1=0.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAAGCACTTTGTGAGTATGGGG
R:
CTCTATCTTGTAAAGGCTGGGATCC
Band lengths:
262-726
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development