HsaALTD1041261-3/5 @ hg38
Alternative 5'ss
Gene
ENSG00000189298 | ZKSCAN3
Description
zinc finger with KRAB and SCAN domains 3 [Source:HGNC Symbol;Acc:HGNC:13853]
Coordinates
chr6:28359525-28361471:+
Coord C1 exon
chr6:28359525-28359664
Coord A exon
chr6:28359665-28359988
Coord C2 exon
chr6:28361324-28361471
Length
324 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGAA
5' ss Score
6.68
3' ss Seq
TAAGAACAAATGATTTCTAGGTT
3' ss Score
2.84
Exon sequences
Seq C1 exon
GGATCTTCTGCAGAAATAGCGCTGGAAGCTAGAGTGAGGCCTGAGTACTGCCTTGGCCTAGGATGGCTAGAGAATTAAGTGAAAGCACAGCCCTGGATGCCCAGTCTACAGAAGACCAGATGGAGCTTCTGGTCATAAAG
Seq A exon
GTGGAGGAAGAAGAAGCCGGTTTTCCCAGTAGCCCAGATCTGGGTTCTGAGGGCTCCCGCGAGCGCTTCCGAGGCTTCCGCTACCCGGAGGCTGCAGGCCCCCGCGAGGCGCTGAGTCGGCTCCGAGAGCTCTGCCGACAGTGGCTGCAGCCTGAGATGCACAGCAAGGAGCAGATCCTGGAGCTGCTGGTGCTGGAGCAGTTCCTGACCATCCTGCCGGGGAATCTGCAGAGCTGGGTGCGGGAGCAGCATCCAGAGAGCGGGGAGGAGGTGGTGGTGCTATTGGAGTATTTGGAGAGGCAGCTGGATGAGCCGGCGCCGCAG
Seq C2 exon
GTTTCAGGTGTTGACCAGGGGCAAGAACTGCTCTGTTGCAAGATGGCACTATTGACACCAGCCCCAGGGTCACAAAGTAGCCAATTTCAGCTAATGAAGGCTCTGCTCAAGCATGAATCTGTGGGATCCCAGCCTTTACAAGATAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000189298-4-3,5-3,6-3,7-3,8-3-3/5
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.241 A=NA C2=0.154
Domain overlap (PFAM):
C1:
PF0202312=SCAN=PU(97.9=70.1)
A:
NA
C2:
PF0202312=SCAN=PD(0.1=0.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGATCTTCTGCAGAAATAGCGCT
R:
CTATCTTGTAAAGGCTGGGATCCC
Band lengths:
286-610
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains