RnoEX0101930 @ rn6
Exon Skipping
Gene
ENSRNOG00000055000 | Zkscan3
Description
zinc finger with KRAB and SCAN domains 3 [Source:RGD Symbol;Acc:1305753]
Coordinates
chr17:45247794-45255752:+
Coord C1 exon
chr17:45247794-45247823
Coord A exon
chr17:45253971-45254445
Coord C2 exon
chr17:45255605-45255752
Length
475 bp
Sequences
Splice sites
3' ss Seq
TAGTTATCTCCACCTCTCAGTAT
3' ss Score
3.49
5' ss Seq
CAGGTAGAA
5' ss Score
6.68
Exon sequences
Seq C1 exon
GCGGGGTGCTACGAGGTGCTGCGTTCGCGG
Seq A exon
TATTTTGCAGAAATACAACTCACAACTACATTGAAACAGGAGAACTGCTTGGTTCGGGATGGCTAGAGAATCAAGGGAAAGCACAACCCTGGACTCACACTCTGCAGAGGACCAGATGGAGCTACTGGTCATAAAGGTGGAACAAGAAGAGGTCTCCCCATTGGCAGAGGAGACCAGTTGGCTGGGCAGTCCTGGGCCTGACCGCTCCCGCCAGCGCTTCCGTGCTTTCCGCTACCCAGACGCAGCAGGGCCCCGGCAGGCGCTGAGCCGGCTCCGCGAGCTATGCAGACAGTGGCTGCGGCCAGACATGCACAGCAAGGAGCAGATCCTGGAGCTGCTGGTGCTGGAGCAGTTCCTGACCATCCTGCCAGGGGAGCTGCAGGCCTGGGTGCGCGAGCAGCACCCCGACAGCGGAGAGGAGGTGGTGGCACTGCTGGAGTACTTGGACAGGCAGCTGGATGAGACCCCTCCACAG
Seq C2 exon
GTTCCAGATGATGACGATGGGCAGGAACTCCTTTGTTCCAAGGCAGTACTGTTGACATCAGCTCAAGGCTCAGAAAGTAGCCAGATGGAGTCCATGGAGCCTTTGCTTAAACAGGAATCTTTGGGATCCCTGCCCTCAGAAGTTAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000055000-'0-5,'0-4,8-5
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion (Ref, Alt. ATG (<=10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.313 C2=0.680
Domain overlap (PFAM):
C1:
NA
A:
PF0202312=SCAN=PU(97.9=67.6)
C2:
PF0202312=SCAN=PD(0.1=0.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]