MmuEX0053873 @ mm9
Exon Skipping
Gene
ENSMUSG00000021327 | Zkscan3
Description
zinc finger with KRAB and SCAN domains 3 [Source:MGI Symbol;Acc:MGI:1919989]
Coordinates
chr13:21486656-21494613:-
Coord C1 exon
chr13:21494541-21494613
Coord A exon
chr13:21487969-21488443
Coord C2 exon
chr13:21486656-21486775
Length
475 bp
Sequences
Splice sites
3' ss Seq
TTCTCTCCACCTCTCAGTAGTCT
3' ss Score
4.12
5' ss Seq
CAGGTAGAA
5' ss Score
6.68
Exon sequences
Seq C1 exon
GTGCCCCGCCCCCCGGGGTCGGACTTTCGACACTTTTGTGACTGCGGGGTGCTACGAGGTGCTGCGTTCGCGG
Seq A exon
TCTTTTACAGAAATACAACTCACAGCTACAGTGAAACGGGAGAACTGCTTGGTTCGGGATGGCTAGAGAATCAAGGGAAAGCACAACCTTGGACTCACACTCTGCAGAGGACCAGATGGAGCTACTGGTCATAAAGGTGGAACAAGAAGAGGCCTCCCCCTTGGCAGAGGAGACCAGTTGGCTGGGCAGTCCTGGGCCTGACCGCTCCCGCCAGCGCTTCCGTGCTTTCCGCTACCCAGAGGCAGCCGGGCCCCGGCAGGCGCTGAGCCGGCTCCGCGAGCTCTGCAGACAGTGGCTGCGGCCAGACATGCACAGCAAGGAGCAGATCCTGGAGCTGCTGGTGCTGGAGCAGTTCCTGACCATCCTGCCAGGGGAGCTGCAGGCCTGGGTGCGCGAGCAGCACCCCGACAGCGGGGAGGAGGTGGTGGCGCTGCTGGAGTACTTGGACAGGCAGCTGGATGACACACCTCCACAG
Seq C2 exon
GTTCCAGATGATGACGATGGGCAGGAACTCCTTTGCTCCAAGGCAGTGCTGTTGACATCAGCTCAGGGCTCAGAAAGTAGCCAGATGGAGCCCGTGGAGCCTCTGCTGAAGCAGGAGTCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000021327-'0-5,'0-4,6-5
Average complexity
S
Mappability confidence:
88%=100=75%
Protein Impact
ORF disruption upon sequence exclusion (Ref, Alt. ATG (<=10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.323 C2=0.598
Domain overlap (PFAM):
C1:
NA
A:
PF0202312=SCAN=PU(97.9=67.6)
C2:
PF0202312=SCAN=PD(0.1=0.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: