HsaINT1047250 @ hg38
Intron Retention
Gene
ENSG00000189298 | ZKSCAN3
Description
zinc finger with KRAB and SCAN domains 3 [Source:HGNC Symbol;Acc:HGNC:13853]
Coordinates
chr6:28350272-28359988:+
Coord C1 exon
chr6:28350272-28350388
Coord A exon
chr6:28350389-28359524
Coord C2 exon
chr6:28359525-28359988
Length
9136 bp
Sequences
Splice sites
5' ss Seq
AAGGTCAGT
5' ss Score
8.68
3' ss Seq
AATGATTTCCCACCTTTCAGGGA
3' ss Score
8.96
Exon sequences
Seq C1 exon
GGCCGTTACCGAGTGTCCGGGTCGGTTCTTGAGGGTATTTGGAGACGGGATGCATGGGTCACATAGACAAGCCTCGAGAATGGGAGCCGTTACATTTTTGCACTGCCTGGTAACAAG
Seq A exon
GTCAGTTTCAAGGTCTTTAAATTATTCTGTGGTACTGGCCAAGAGCCAGAACGTTGGAGTCAGATTACCTGGTTCAAATCCTGCCTCTGCCACTTACTGGCTGTGTGACTTTTCACTAGTTCCTAAGCTCTCTCTCTGCCTCATTTTACTATTTTGTAAAATGGGGATAATATTCCCTAACTCACTGGGTTGTTGTGAGGATTGAATGCATTCGTATGGGTAAGGTGCAGAGTAAGCATGATTTAAAGATTTGCTTTTATTAGTGGTACTATTATTATTTATAACTATGATGACACATTAGTGACTGGCTTTTGTACGGTTGCTTTCAATTTTACTGTCATTCATCAATTCACTTTGTAATGGATGATTTCTATATTTTAGGAGGGAAAAATAAGATACTCTGAAAAAGAGCCTATCCCAAAGCAAAGACCAAAACTGGTTTGTGTTGGACGTTGTGATACTCAAACTCTCAAAGGCTTTAAGACTCGGGGGTACCTTTTCCTTGGCTGGAGATTAGGAGGAACAATAGAAGTTTTTAATAGTGAAAAAGGACTAGGACCCCTGGTTTTTGCAAAAATCTGATGTCCTGCTTAGTGCTGGAGATCCACCAGTTTTCGAGCTTCCAGGAACGCCCTAGCCTGAAACTGGCTTCATACTAACACCCTTCATTTCAACCCAACTTTTACAGGGTTAGCTCTTTCATAGACTTGTAACTCTTTTCTGTTAATGAGAAACTTTCCTTTCCTTATCTTCAGTATATTTACTGATTTGATAAATACTTTGTGTTGGCAACCAATTTCCCAATCTTGTGCCTTCCCACTGTGATCAGTTTGGCTCAGATCCAAGTAGGGGCCAGGTAGTGAAACCTAAATGGAGTTTGTGGAATAAATGATATAAATGTATCAGTGTTGTTTTCCTGCCATAGACTTCCTCCCTTCCCCACCGTGGACACCCTCCTCATTCCACTTGGGCTCCAGATTCACTCTGGGTTGGGCTGTGGCTCTCTCTCGCCTTCCTTGACCCTACCTTAATGCTTTTTGGCTGTATTATTCAGGAAGGAAAGAAGTTAGGACATTGTTTAATTTTCTAAAATTTTGGAGAGAAATTTAAACACATTTAATTGTAGAGAGAATGTTACAATGAACACCAATATAACCATGACTCAGCTTCAGCCATCATCTTTTGGTCATTTTCTTTCATTCTTCTTTTCCCTCCTTTCCACTCTCTTTCCTTCCCTTCTCCTCCTCCTTCCCTTTTGTCTCCCTCCTTCCCTTTTACTTCCTCCCTCTTTCCCTCTCTCCTTTCTTTCCCTCTCCCTCCTTTCTTTGTCTTCCTTTCCTTCCCTCCCTCTCCCCCTCTTTATCTCTTTTTTTTCCTCATTTCGTCCCTCTCTTCTCTTTCATTTTATAGCAAATTGCAGATGGAAACATTTTAGTTCACTCACAAGTACAAGTACTTCAGTGTCAATTTCTTATATACAGGGACTTTTATCTTAATATAATCATAGTATCATGATCACACGCAAAAAAATTGACAATAATTCCTTGATATCATTATCTTGATTTTCAAATAATTGTCTCAAATATTTCTAGAGTTTTTTTTTTTTACAGTCTTTTTACAGTTGTTGTTTTCAGTGGGGTCCGAATATGGTTCACCATTTGCATTTATTTGATAAGTCTGTTCAGTCTTCTAATCTATGACAGTTCCCATTCCCTCCCACTCCTTTTGGTAAAAATGCCATTTATTTGTTGAGGAACTTGAACCTTCTGTTTTATAAAATGCCTCACATTCTGGATTTGGTCGATTGCTTCTTTTTAGTATCTTTAACTTATTAGATCTCAAACTCAGCTGCACATCAGAATGACCTAGAAAGTTTTAAAAGTTATTGATGTATTAAAAGTCCCACCCCCAGAGAGTGATTTAATTGATTTTTTTTTCATTGCAATCTCCATCTCCCAGGCTCAAGTGATTCTCATGCAACAGCCTCCCAAGTAGCTGGGATTACAGGTGTGTACCACCACACCCAGCTAATTTTTGTATTTTCAGTAGAGACAGGGTTTCGTCATATGGGCCAGGCTGTTCTTGAACTCCTGACCCCAGGAAATCTGCCTCAGCCTCCCAAAGTGCTGGGATTACAGGTGTGAGCCACTGCACCCAGGCTGATTGATCTTGATTGTACCCAAGGCATTAGGATGTTTTAAAAGCTCCCCAGTGATTCTAATATGTAACAAAGTTTGAAAGCCTTTAATGTAATTTGCTCCTATATTTCACCTGTACACTGGTATTTGGATCTAAAGACTAGATTAGATTTAGGCTCACTTATTTTGGTATTATTAGCTCATGTAGGAGTACCCCAGATCTCTTGTGGCAGCTTATTAGGAGGAAGTATTTTCTGGTACTTTTGATTTGTGACAATCAATGGCTTCTCTCAGTTTCCTAATTTCCTTCTATTCCCTACCATCCTTTGAACTGTAGAGAGTTGGACTGAGGAATAGAGGTTCAGGAAGACACGGACTTGGAATTGTTTTTCCCTTTGTAACCTCTACCAGCCTTACATTTCTTTTCTTTTCTTTTTCTTTTTTTTTTTTTTTTTGAGGCAGAGTCTTGCTCTGTTGCCAGGCTGGAGTGCAGGTGCAGTGGTGCGATCTTGGCTCATTGCAACCTCCGCCTTCCGGGTTCAAGCGATTCTCCTGCCTCAGCCTCCCAAGTAGCTGAGACTATAGGCGCATGCCATCACGCCCAGCTAATTTTTGTATTTTTAGTAGAGACGGGGTTTCACCATGTTGGCCAGGATGGTCTCGATCTCTTGACCTCATGATGTGCCCACCTCAGCCTCCCAAAGTGTTGGGATTACAGGCGTGAGCCACTGCGCCCAGCCCAGCCTTACATTTTCTAGCCTCTCCATTCCACTGAGTAAAGAGGGACTTACTGACATCCGAGTCCAGTCAAATAATTTTGCAGTCACTCACTTCTAGTTTAAAATCTAGTCCCAGCTGGTTCACAGGAATCTCAGGTTTCCCTTCCCTCTTAGATCAGGCCCAGGTCTCATGGCTTCTGGGATAGGCTCTCTTTCAGAATATCTTACTTTTCCCTCCTAAAATACAGAAATCATCCATTACAAAGTGATGACTCTGACGAAACCTGATGGCTGGTGCTGTTGTTTCTAGATAATACCATACTGAGGAAGGAGTAGATTAGGAAGCAAGAAAATCACTTTGATTTGGGGCATATTGAATTGGATTTGTTTGCAAGATTTCCATATAGGACCGTCTGGGAGGCAGCTCAGGATAGGGATCAGGAGTCTACAGCCTAGAAATAGAAGTTAAAACCTTGCGAGTGATTAAAGATAGTTCTGGGGAAGACTGTGGATAGAGAAAAGAAAAGGTCAAGAACAGAACCACCAGGCCTACTCTTATTTAAAAAAAGAAAGACCAGTGAATTATACTATTAGCCAACATGTATATGGTACTTACCACTGTCATGCCAAGTGTCAGGTTCCAGCCCATACTGAGGTCCGAGGGGAGTTGTTGGATGGGTGGCAGGTAGTTGAAAGAACACTCGGGGCTGTAGGCAGGTAAAATATGATTTTATTCAGCAGCAGCTGCTGCAGCTCTCACACTGTCTGCCTCTGTCTCGGCTGCCTCCTCCGACCGCAGCCCTTCTCAGCAAACGGCTCTGTGGCTCCTGCCGCTCCCACACTTACAGCTGTACTCCTTGGCATGCTTGTTAATTCCTGGCTCACCTCTGTCTGTCTGCAAGATGGCCAGTTCTCTCTTACAGGGTCAGCAGTTTTTCTCTCTCTCTCTGGGCACAAGTCCTATGTACAGTGTCAGCAGGGCAATTATACCATTTACAGACAATAGTGGCTGTAAGCCAAGTATGAGCTTACACAAACAGGTTATATAACAAGTGGAGTGGTGCGCCTGCGTTCCAAACTCGCTGAGTCACGCTGGCCTGCATATCTGCCTCGGCCTATTCTTGACCAAAGCACATCCATTTACCTTACACTCCACCCCCTTGGCCGAGGGAGACATAGGTTTTTGGGTACACAGGCCCAATATATAGGTTTGGCACACAGGCCTGACATATAAACTTTGGGCACCCAGGGCTGATACACACAGGCTTGACACATAAGTCTGACACATAGGCTCTGGGCACACAGGCCCAATGTATACATAGAGGCTTGACACATAAGCCTGACACATAAGCTCTGGGCACTTGGGCCACAGTAATACAGGGAGCAATAATTTCAGGTTATAGTGAGCAATCACTACATGGTGATGTTACCCCAATGTTGCTTTATATATTAATCCAGGGTTTTTGCTTCCCTACCTTTAGGGTGTTGGGGCGGGCAACAACAGGTTACTGTTTGTCCCCATACCTGGTTGGAGGAAGTCATCCTTTCTCTCATAGATCTGGCCACATGGCCTGGCCCTACATGGGTCGGTGACTAGCCACTTCTGTAACTTCTAGGTAGTTAGCCACAAGGTTAAGCCTTGATAAACTGCCCAGCTATCAGTGCAGATTACGTGTCACCTTCTTGGTGATCACCATTTACATTGCCCTGAGTTCAGTTTATTAGCTACTTTGTCCACACCTGGTATCAAACCATAGGGTGTTGGTACTAGGCTGGGCTGCAACAGCAGTCCAGGTAGCAGTAGCACCCTGGCTAGACCTATCTGTGTACCATGCCCCATTGGGAATGCGGGAATGCCCTTCCTTAAAAGGTGAAGGCTCAGGATCTAGGGGTGCCTCAGGTCCCATAACCTTATCTTGCATTAGGACTGTAGGTCCTAAGACTTCCTGTAATTGTGCTTCTAAGGGACTTGAGTTAGCATACTTTGCTGTTCCAAGTAGGCTTAAGCACCCCACTTTACAAAAGTGGATGTCTGTGCCATCCCAGTGTGTGGGTTGTTACCCATGAGCATACCCACCCTGCTATTGGGTAAGTCATGCGCGCGACGACTGTAGCCCATCCTGCCAGGCTGTCACGAGTCTAAAGGGCAGCATATGCAGTTAGTAACTGCTTCTCTGTCGAGGAATACTGGAGCTCAGCTCCCTTCCAAAGTTGGGACCAAAAGTCTACTGGCATTCTAAAGAGCTCTGTGTGATGCCATAAGCCCCAGTCAAAACTATCTGGTCACATGCACATCAAGTTTAAATGGGTGCCCCGATCAGCTACCCATAGGGCTTGTGCCTGCTGAATAGCCTGTTTGGCTGCCAGGAAGGTGGTTTCAGCCGCATCATCCCAATTCCAGGCAAGAGGCTGCGTTGCTGCTTCTAAATCTGCAAGAGAATCAGAGGTTAATATAACATCATTAATAAGATCATGACATATGTTGGGGCTATGCATATATCCCTGCAGCAATACTGTGAAAGTCCATTGTCACCCTCCCACGAAGGCAAAGTGTTCCTGGCTCTCTGGAGCAATGTCGATTAAGAGGAATGCATTGGCCAAGTCCACCACACAGTGGCACCATCCCAGTTCTGTTGTCAAGTGGCCTATCAAATCCATGATAGACGGCACAGCTGCCAAGCCGTGCAAAACATCCACCCACAGCCTGTCCTCAGGCATGGGAGAGACATCCACAGTGCATAAGCAGGGAGCTAAGCGGCCGATGCCGAGGTCCAAAGATACAGGTTTCACTTTCACTGACCAGCTTTCATAACCGTCAATAAATGCAGCTCTGCCCGGAAACTTATTCAGGTTTAGGGACCAGTGGCTTGCCGAGTCCACATATTGCCTTTGGTTGTCCGGTGTCCCCCCAAGCCTGGCACCTGGGTCAGTTCCCAATCAAACAGGAAAGACTTTACATTTCTGCCTGACTGCAGCAGGTAATCTTTGAGCTGGAACGCTCCGGCGGGACCTAGTTGCCCAGCAATGTCCTTTTCCCGAATGACTTGCACTAAGTCTATATACAACTGCCATCTACTGACAGTTTCTGGTATTTCACCGGCATCAGACCACACTGTAATTAAAGAAGCCAGCTTTTCCATCTCAGAGGGGGAGCAGGAAATGGATCAGCTCCTTTGTCCCGGAGAGACAGAATTCAGGCAGGGAGTCTCCCCCAAATGCTGCTGGCACTGCTTGCCTAACTCCCACAACTCAGTGGGGGGTACAAGCACTATAAGAAGTGTGCTTCACTATGGTAGGGGGTCTCTAGGCCCACCCTTGGGGCCCAGTGGCTGTTCATGCTCTATTTTCTGGCAGACCACTGGGTGAGCCTGTAATGGAGGTTCGTCCTCCTCCCTGCACTGCGTCCAGCAGGGACTGGGCATGCCCTTCCAGCAGCACAGTCACAAATGCCCATCTGACTCTGTTGGCAAAGGCACACTCCTTCTCGGTCCTGTGCATTTCCAGGTGCTTCAGCACCTTCTCCACACTCGTGGAGGGCCTGTCCACTGCCGCCCATGTTTCCACCAGAGCCCATCCTTGCAGCACGGCTGCCACTGGGTGCCACAGCTCATGCTGTGGCTGCATAGCCGCTCCGGGAGCCTGGGGGCTGAAGACCCACTCACCTCATCTTGCTCACTATGCCAAATGTCAGGTTAGAGCCCCAGCTGAGGTCCAAGGGGAGTGGGTGGATGGGGGGCAGGGAGCTGGAAGAACACTCGAGAGACAGCAGGTAGATGGGACATGGCTTTACTCAGCAGCTCTTTCACAGTGTCAGTGCCACATTTATACACCTCACAAACAGTAGTATCTTAGAGCCAGGTGATGAGCCTCCCCAGATTATGGCTACATAACTGTGATTATATAATGCACGGAATTGTGTGCGTGCGCTCCAATCCTGCTGAGTCATGCAGGATGTTTACCTCGGCCTATGCCTGCTTCGCTGCAGCACAGCCATGTTCCTTACAACCACACACCAGGCACTGTTCTAAGAGTTTTATACACTCACTTACTTAATGCTTACAATGGCCCTATCTGCTATCACTATCCCTATTACAGATAAGGAGAGGGAGGCACAGAGCTAGTAGGTAGTAAAGCCAGGATTTTGACGACCTCAGGAAACCTGGCTTCAGAACACTTAACCAGATTATGATGGGAGCTGAGAAGAACCAGGAAGGAGGAAAGCAGGAGAAAGCAAGATCCTTGAAGTAAGGACAAGTGAGTTTTTGGAAGTGGACAGTATCCTCAGCCCAGTTGCCTGAGAAGAGGCCATGGAAAATGGGAATTGAGGGAAGCACCTTTGGTTCCTTCTGCATGCGAAATCTTAGTGGTCTTGGCAGTTGCAGCCTACAGTGTGTGGAAGGCTTAGTGGGAGGTGAGGACTAGAATCAGGGACTAAGGACTTTCTTTCAAGAAGTTCAGTCTTGAAGGGGAAGAAAGAAAGTGGCAGATTGAGGAGGTGGCAAAGACCAGGGGCAGCCTATGCTCTCTCCAGGGGAAGGGCTTGGTGATGTTTTCGGCTGCCTTGATGTTTCTGAGAGAAACTGAAGGGCCTTCAGCCCAAAGATCCGAAGAGCCTGCAGAAATCCTTCTTTCAGCTGAATTTTAATGTGAATGTTATGCCAGTTTTTTGGGCAAGCCTCACTTCAGATATAATTGAGGGTCTCACTAGCAGGCAGCCAAGGTTTAATTCAGTTCTATTTCTTTTGGTCCAGGGCCTTCTGTCTTTTCTTTCTTCTTCCCCTTACTACAGTACCTTGACCACAGATAAGACCTGGTACAGCCATCCTTCACTATCTGTGGGGGATTCATTCCGGGATCCCCAATGATACCAAAATTTGTGGATGCTCAAGTCTTACATAAAATGGCATATAGTATTTTCCTATAACCTACACACATCCTCCTGTATGTTTTTTTTAAGAGATGGAGTCTCTGCACTGTTGCCTAGGCTGGAGTACAGAGGCACAATCATAGCTTACTGCATCCTTGAACTCCTGGGCTCAGGTGATCCTCCTGCCTCTTCCTCCTGAGTAGCTGGGACTGCAGTAGTGCGGCACCAGGCTCAACTTCTCTTGTACACTTTAAATCATCTCTAGATTACTTATAAACCAAATACAATGTAAATGTTTTGTAAACACTTTTTATATTGTATTTTTATTTGTATTTTTTAATTGTTGTTTTTGTTATTTTTTTTTCCCAGATATTTTCCAGCTGTGGTTGGTTGAATCTCTCAATGCAGAACCCACAGATATAGAATCAACTGTATTAGTTTTCTATTGCTGTATAACATTTACCTCAAATTTATCAGCTTAAAACAAAATCTGGGCTGCGCGCAGTGGCTCATGTGTTTAATCCCAGCACTTTGGGAGGCCGAGGCAGATCTTTTGAGGTCAGGAGTTCGAGATCAGCCTGGCCAACATGGTGAAACCCCAGCTCTACTAAAAATACAAAAATTAGCTGGGCATGGTGGTGCACACCTATAATCCCAGCTTCTTGGGAGGCTGAGGCAGAAGAATCTTTTGAACATGGGAGGTGGAGGTTGCAGCAAGCCGAGATCATGCCACTGCACTCCAGTCTGGGTGACAGGGCAAGACTCTGTCTCAAAACAAACAAATAAGAAAAAAAAAAAAAAAAAAAAAAAAATCAGCTTATTTGTTCCAGTTCTATAGGTCAGAAGGCCAGGCAGGCTCAGCTGAGTTCAATATTAGGGTCTTCCCAGGCCAAAGCCAAGGTGTTGGTAGGGCTGGGCTATTATCTGGAGGCTCTGAGAGGAATCTACTTATGAGGTCATTGAGGTTGTCAGTAGAATTCAGCTCTTTGGGATCAGTCCAGTCAGTCTGGACTTGCTATCTCATATTGAAAGTCCTGAGGATTAGGGCAGGAAATCATTAGGGTCATCTTAGAATTTAGACAACCACAGACCTGGTTGGTAATGGGATAACTCTGAGCAAGTCACTGAGAGGAGCTTCCTAGAGAGTCCAGGAAGTGCCCTGGATCCTCACCAATTTCAGTTTTTTTCCTGATTAGTCAGGGGCTTGGGGGTGTCCAGGATCACTCCAGGACATCCTTTGGGAACCTTACTATGGGATTCAGGTTTGGGGTGGTGTAGAGGATTAAGCTGCAGAACCACTGAACATGGAGAAATTTCTGCAGCAGTTCCCCAGAGATGTCTCTGGGCTCCTGGGCAGGAGAGAAGGGACTACTTGCAAGTTTACTGGTTAATAATGATTTCCCACCTTTCAG
Seq C2 exon
GGATCTTCTGCAGAAATAGCGCTGGAAGCTAGAGTGAGGCCTGAGTACTGCCTTGGCCTAGGATGGCTAGAGAATTAAGTGAAAGCACAGCCCTGGATGCCCAGTCTACAGAAGACCAGATGGAGCTTCTGGTCATAAAGGTGGAGGAAGAAGAAGCCGGTTTTCCCAGTAGCCCAGATCTGGGTTCTGAGGGCTCCCGCGAGCGCTTCCGAGGCTTCCGCTACCCGGAGGCTGCAGGCCCCCGCGAGGCGCTGAGTCGGCTCCGAGAGCTCTGCCGACAGTGGCTGCAGCCTGAGATGCACAGCAAGGAGCAGATCCTGGAGCTGCTGGTGCTGGAGCAGTTCCTGACCATCCTGCCGGGGAATCTGCAGAGCTGGGTGCGGGAGCAGCATCCAGAGAGCGGGGAGGAGGTGGTGGTGCTATTGGAGTATTTGGAGAGGCAGCTGGATGAGCCGGCGCCGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000189298:ENST00000377255:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.241
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0202312=SCAN=PU(97.9=70.1)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains