RnoINT0169025 @ rn6
Intron Retention
Gene
ENSRNOG00000055000 | Zkscan3
Description
zinc finger with KRAB and SCAN domains 3 [Source:RGD Symbol;Acc:1305753]
Coordinates
chr17:45247794-45254445:+
Coord C1 exon
chr17:45247794-45247823
Coord A exon
chr17:45247824-45253970
Coord C2 exon
chr17:45253971-45254445
Length
6147 bp
Sequences
Splice sites
5' ss Seq
CGGGTGGGT
5' ss Score
6.14
3' ss Seq
TAGTTATCTCCACCTCTCAGTAT
3' ss Score
3.49
Exon sequences
Seq C1 exon
GCGGGGTGCTACGAGGTGCTGCGTTCGCGG
Seq A exon
GTGGGTTCGGGTTCCCTCCTGTTACGGTCCTCCCGCGGGGGCCGGCTGCTTGCGGGTGGTGGGGATGGGACAAAACCTCTTCCTCCGCGGCCTAATGGCTCCGGGAAAATAAAATCGGTGGCTACTTGGGCCGAGCGCCGGACAGGGCCTCGGGCGCCTCGCCTCAGGCCGGTTCCGGGTGTCTGGTCAGTCTCAGGGCGTTTGGCGATGGGATTCTCGGGTCTTGTACTTAAGCTTTGAAAATGGGAGACGTCACAGTTTTGCTTTTCCTGGAGACAAGGTCAGTTCCAAGGTCTTTATTCTGGGGTACTGGAAGAGAGCCAGAACTTTGAAATCGGGTTGCCTGGTCGAATGTGGCCTCTGCTACTTGGTGACTTCTCCCAGTCCCTTAACCTTTCGGTGTTCTGCTATTTTAGGGGATAATAATATCGTCTAACTTACTGGATTGTTGTGAGGAGTAAATGGCTTCATTTGTGCAGAGGTGCTTAAAATAGTACCAGGCACGGGGTAATCTGCACAGTGTTTTAAGATAGCTGTTATTATTACTGTTGCTATTTCTAACTAGGACAGCACTTTCTCTGCGTTGATTAGCCTTGGTACTGTCTGTTGTCTTTTGAATCTTAAAGCTATTTACCAGTTCTCTTTTAATGACTGACTTCTGTATTTTAGGAGGGGAAATAAAACATTCTGGAAAAGATCCTATCCCACAGCAAAGACTTTGTTTTGTGTAGTGTCTTGTGATGCTCAGACTCACAGAATTTTAAAATCTTGGGGATGCCTTTTTTATTTTATTTTTATTTTTTTAGTGGGAGGAAGAGCTTGAGAAACAGGAGGAGCATCTAACAGTGAAGAAGGATAAGGACCCTGGTGTAAGCAGACATTGCTGTTTTGCTCGGTGCTGCGAACCTGCCAGCTTTCTGACCCTCAGCAAGAATCCTCACCAGCTTGAGAATCACATGGATGGTTGATAGATATGACTGATGATAGGTAGATCAGTGGTAGATTAGAGATCAATAGATCTGAAACCGAGTTCACACTAACATCCTTTGTTCTTTTTACAGGTGTTTAAAGCTAATATTGACCATATACAGTTGACCATTGTCATTGAGTTGATGCCCTTGGGATCTTTGAAAATCCTTTCATCTTCCTTCTTTTTCTTAAGAAATTTGGGTCTTTAACCTCCTCAGGGTGTACAGGGATCCCTGGAGCATTCTTTTGTCTATTTGTAACTTAACAAAAAACAAAAACAAAAACAAAAACCTTGTCTTTGGTTTACTTATTTGGCAAATGCTTGTGTTGGTAAACAATCTTCTGATCCTGTACCTTTGTACTCTGCCCAGTTAGTGAGACTCCAGATGGGAGGGCTGATGAAACGTGAGTGCATGAAATGATTGTTAAAAATGTATCAGTGTTCATTTTTCTCCCTACAGCTTCTCCCAACAGCACCACTCCCTTTCAGCCTCAGATCTACTCTTACCTCCCTTGGCCCCAACAAAATGCTTTGGACTGTACTCAGGAAAGAAAGAAGATAGGATTTTGTCTACTATTTAAAATTACATTAGTAAAGGTTTAAATGTAAGTCAGAGAGAAACTTCATTTCACCTGTAATAGTAGGCCCACCATTCAGCCATAAACTTTTAATCGTCTTCAGTCATGACTTACCTGCCTTTCCCCTTTTCTTCCCTTTCCTCCATCTGTCCCCATCTACCTCCCTTTTCCTTTCTTTTCCTGCTTTTCTTCCCCTTTCTTCCTTTCATTCTTTTTACAGAAAACTAGAGGCCAAGACATCAAATCCTTTCATCTGTAGGCACAGCAGTGTTATAAAGTAGGAACTTTAATTTAGACATACTATCGTGAGCCAAATTGACAGTAATTCCTTAATATTGCATTCATACTTTCCTGATTGACCCACAGGTATCTTTTTATAGTTAAAACATACTATATTTAAACTACGTAGTATGTATAGAGTCGCTGTCCCTTGATAGTCCACCTTCCCTTTGCTTTCTCTTTAAAAGTAACATTTATTTGTGGGAGAACTTGGTTTTCATTATTCTCACATCAGTTGCTTTATTCTACTGATACTTTGAAAGGAAAATCTTATCTTTAGCTTCTTAGTTCTCAAATTTGGTTGCACTTTGGATCACACAGTAAGTTCTCAGATACAGAAGCCTGTGACCCACTGGTTCAGTTCACCTTGGCTACTCAACTATTAGGAGGCTTTAAAAGTTTCCCAGTGGTTCTGTTGCATAGTATAACTTTAATACTTTTAATTTGTTTTTGTGTTTTTACCTGTACATGAGTTCATGAATCTAGAGGCTTGATTAAATTTAGGTTTACTTTTTGAATAAAATATTATTTCAAATCTCTTATGACAGCTAATTAGGAAGTATTTTCTGATTCTTTGTAACACTTGATAAAATATTTACTCAGGTGTGATGGTTCACAATAGTACTATCAGCTCTTGGGAGGTGAGGCAGGATTGCCAAAAGGAAAAAGAAAAAACAAAATTAATGAGTCAAGGTTACTGAACTTCCATCACCTGTGTTATCCCATAAATCATAGAAAATTGGACTGAGAAATAGAAATTCAAGTGGGCATGGACTTGGAACTGTCTTTCCCTTAATAATTCTAGCCTTTACCTGTTCTGATGTTCACTGAGTAAAGACAGATGAGCTGCTCTCTCAGTGTACCCATAGAACTTTGCAGTCAGTCCTAATTTGAATCCTTCAGATTCAAAGGAATCAGATCTTCTGTCCCTTTTAGTGAGCCCAGGTCTCACAGCTTCTAGGAAGCTGAAAACTGAGGCACTTACTTAATATGTGACATTTCCAAGGCATGCATCTGATAGTGATAGGGAAAGATTATTTGTAAATGTTGTCTTATCACAGTGGCCATGCTCTTACTCAGGTGGGATTCTCAGCCAGCCTTCTCTGGCATGGATTATGCCAACTTCAGCTCCCTGAAGAGGCACATTGGGACAGCCACTGATTGCCTATTTAGCACTTACAGCTTTTGAGGTTCCACAGTGAAGGAAAAGGAAAGTGCTTCTTTTACTCATTCTGTCTGGGTCAGAGGTCTCCAGTCTGTCTGCCCGTCCATCTGCTGTCCATTGTCCACCTGTGGAAGTAAGCCTGCCATGCCTGCCTATGCACTCTGGAGGCAGCCTTTGTCCTTTCCTCCTTACCAGGTGACTCTTCTCTCTGCTCTGAGTTTTCTGCAAGCTTGTAACACCGAGATGTATCAGCCGGTTTTCCAGTTTTGAAGTTTACATTTGTGTGTGTGTGTATTGTATGTTTGTGTTCCGATATTTGTGCATGTGTGCACACTGGTATGTGCACACATGTATGAACATGGAAGCCAGAGATCAGTATTGAATGTCTTCTTCTATTGCTTTCCACCTTTATTTTTATTTATTTATGTTTTTTGAGACAGGGTTTCTCACTGAACCTAGAGCTCACCAGTTGTACCCAACTGGCTGTCCAACAAACACTAAGGATTCTTTGATCTATTCAGCCCAAGTACTAGAATTACAGATGCATGCACCACATGGTGTTTGCCATGGTTGCTGAGGACCTGAGCTCAGGCCCTCAAGTTTGTGTAGCAGGCACTTTACTGACTAAGCTGAATTCCTAGCCCCTACATTTGGACTCTTACAGTAGTGGTTTATAGTTCCCAAGGTGACATTTAGCAACTCTGGAGTTGTTTGATGCTATTGTCACCTAGTACACAGAGACCAGGAGTGCTGCTAAACAGTCTAGTAATTGTCAGATAGTCCCTCTTTTTTATACCATACAGGTAACCTCATTTAAAATGGCTGAACTTGAGAAAGATGGCCTTGGAATAAATTTTAGAAAAAAAGGCATTTGCGTCTATTCAGTCTTTTCTCTTATACAGTAACAGATTTATTCTGTTTCTACTAGAAATACCTGAGAAATAGAAAAACAAGGTGAGAACCACTGTTTTCAAGAAACTCAAAATCCAGGGGGATAGACAATTATTTATTTATAGTTTTAGTACATAGCCTGAATTGCTTTAGATTTCACTATGTAGACCAGTCTGGCATTGAACATGCAGCTGTCCTCCTGTCTCTGTCTGACCAGTGCTTGGATTACAAGTATACTCCATCAAGCCTGGCTGACAGGTTTTATTTGACATTCCCAAAGTTCCGGCAGGGGACATGCGTAGAAACTAGTGCTAGTTTGAATGGAAACATACTTGTTCTGGTTAGGAATTTTAGATCACTGCCTATTCAAAGCTTGGGAGGATAGGATAGAAAAGTGTGTGTGTCCATGCGTTTGTGTGTGTTTACTAGGCTGTAAACTAATGCTAATAGCTATGAGGATAGAGACACAGCAGATCTAAGAGACATTCCGGGGTAGAACAGATTGGAGTTGCTGATCCATATTGAAACTGAGTGAAAAGAGCAATTACATGATTATGAGGATGTCTATGGGTAGAACTGCTGCATGTAGAGAATGCTGCAATGGGAAGGTGGGAGACAGCACGAGAATTAGTTTTGTTTGAAGCATATTATATTTGTTTGTAAAATTTCCACTTAAAACTATATGGGCAGCAAATCAGGATAGGGAGCAAGAGTCTTTAAGAAATAGGAGCTAAATAAAATCTTACAAGTGACTCAAGAATATGGGGTGTGGGGTCAAGAACAGAATGCTAGAGCCCACTCTTACTTAAAAGGAAACAGGCCAGTAAACTTAATGTTAATGTACTACTTTATTAGTTGACATTAATATACTACTCACCACATGCTAACCACTGTTCTCAGTGCTCACAACATTTCTATCTGTTGTCTCTAACCTGTTTACATATGAGGAAATCAAGGCACAGAGATGTGTGACTTACCAAGGTTACCCATTTGGCTGTAGCCAAACCAGAATTGAGACCAGGAATCTTAGCTTGGGGGTCTACATACCTAATCAGACTGAAGGAGGGCATTGAAGAAAAAAAAAGGAGCCAACAGAAGAAAAGAGGTCCCATAACCCAGGGACAAGAGAGTTTCTAGACACAAACAGTAACTTCAGGCTGGTTACCTGAGCAGCCATGGAACGGAGGAACTGAAAGAAGCTTTTTTGGCTATTAAGACGTTTGATCTACATCTGTGTTGAAACCTTCCAGAAAGAAAACTAGAGCTGGGGTCTGGAGGGCTTTGGTCTTGAAGGGGTAGCAGACTAGATGAGTGGGATCATTTCTTCATGGAGATTTCTCTATGATGCTAGCTTGACAATTACACAAGTTTAGTCTGCATGCACCTCATTGCTACCTTACACTAGTACACATTGTTTTCCTAAGCAAACTGCATTTTTCATATACTTTTGGTCTCTATGGATTTGAATAAGCAGGGAACACTAGTCATGCTACAGCCTGAATGCTATCCTGTTTGGAATTTCTTTTGCTAAATTACTCTATTATTTTTTAATTCACTCTCAAGTTCTCTTGGCAAGGACAGAATACAGCCAGATTCTTTGCCAGGATCAAACATGAACAGATTTTCTCTAGTTTCTGAGAGGGTCCATAGTCTCTGAAATTCCACCAACTAGGCCTCCACTGCTCACATATTTCTGGCGTTCTGGAATTCCAAACTCCCACCACAATGGTCTGTTAAGCTTTACTTGTATCCATAGGGTACCCTTCACTTGCAAATTGTTCTCTTCACAAACCAGTCCATAGTTGTAAGAAACACATGGTCAAGTTTATCACAGCAGTGGCCTCTGCTCTGGACTAGTTACATTAGTTACTTTCTTGTGATGACAGAATACCAACAGAAGCAAACAAAAGAAGAGTTTATTTTGGTTGACAGTTTGAGGATACAGTCCAACATAGAGGCAGCTACTCGCATTCTGTTAACTGAGGAAGCAGAGAGGAGCGCTAGTGCCCCACTTGCTTTCTTTTTGGTTGGGACCGGAACCTGTGGAAACATGCCACCCGCAGTCATGGTGGATCTTCAGTCTTACGTTCAGTCTCTCCAAAACACCCTGACAGACATGTCAGACAAGTCCCCCAAGATGGTAGAGAGACGTTTGAGCATGGGGATCTCCTCAGCTGCTCCCTAGCAGTTTCTTTGGGGTCCTAAGCCTAGGAGGAGGGAAACATTTGTAACTACAGTGGCTTATAGTTATCTCCACCTCTCAG
Seq C2 exon
TATTTTGCAGAAATACAACTCACAACTACATTGAAACAGGAGAACTGCTTGGTTCGGGATGGCTAGAGAATCAAGGGAAAGCACAACCCTGGACTCACACTCTGCAGAGGACCAGATGGAGCTACTGGTCATAAAGGTGGAACAAGAAGAGGTCTCCCCATTGGCAGAGGAGACCAGTTGGCTGGGCAGTCCTGGGCCTGACCGCTCCCGCCAGCGCTTCCGTGCTTTCCGCTACCCAGACGCAGCAGGGCCCCGGCAGGCGCTGAGCCGGCTCCGCGAGCTATGCAGACAGTGGCTGCGGCCAGACATGCACAGCAAGGAGCAGATCCTGGAGCTGCTGGTGCTGGAGCAGTTCCTGACCATCCTGCCAGGGGAGCTGCAGGCCTGGGTGCGCGAGCAGCACCCCGACAGCGGAGAGGAGGTGGTGGCACTGCTGGAGTACTTGGACAGGCAGCTGGATGAGACCCCTCCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000055000:ENSRNOT00000080655:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.313
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0202312=SCAN=PU(97.9=67.6)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]