RnoALTD0034713-2/2 @ rn6
Alternative 5'ss
Gene
ENSRNOG00000055000 | Zkscan3
Description
zinc finger with KRAB and SCAN domains 3 [Source:RGD Symbol;Acc:1305753]
Coordinates
chr17:45247723-45254445:+
Coord C1 exon
chr17:45247723-45247823
Coord A exon
chr17:45247824-45248103
Coord C2 exon
chr17:45253971-45254445
Length
280 bp
Sequences
Splice sites
5' ss Seq
AAGGTCAGT
5' ss Score
8.68
3' ss Seq
TAGTTATCTCCACCTCTCAGTAT
3' ss Score
3.49
Exon sequences
Seq C1 exon
TGGTGCCTAGAGAAGCCGGAAGTGCTCTGTGCCCCGCCCCCCGGGGTCGGACTTTCGACACTTTTGTGACTGCGGGGTGCTACGAGGTGCTGCGTTCGCGG
Seq A exon
GTGGGTTCGGGTTCCCTCCTGTTACGGTCCTCCCGCGGGGGCCGGCTGCTTGCGGGTGGTGGGGATGGGACAAAACCTCTTCCTCCGCGGCCTAATGGCTCCGGGAAAATAAAATCGGTGGCTACTTGGGCCGAGCGCCGGACAGGGCCTCGGGCGCCTCGCCTCAGGCCGGTTCCGGGTGTCTGGTCAGTCTCAGGGCGTTTGGCGATGGGATTCTCGGGTCTTGTACTTAAGCTTTGAAAATGGGAGACGTCACAGTTTTGCTTTTCCTGGAGACAAG
Seq C2 exon
TATTTTGCAGAAATACAACTCACAACTACATTGAAACAGGAGAACTGCTTGGTTCGGGATGGCTAGAGAATCAAGGGAAAGCACAACCCTGGACTCACACTCTGCAGAGGACCAGATGGAGCTACTGGTCATAAAGGTGGAACAAGAAGAGGTCTCCCCATTGGCAGAGGAGACCAGTTGGCTGGGCAGTCCTGGGCCTGACCGCTCCCGCCAGCGCTTCCGTGCTTTCCGCTACCCAGACGCAGCAGGGCCCCGGCAGGCGCTGAGCCGGCTCCGCGAGCTATGCAGACAGTGGCTGCGGCCAGACATGCACAGCAAGGAGCAGATCCTGGAGCTGCTGGTGCTGGAGCAGTTCCTGACCATCCTGCCAGGGGAGCTGCAGGCCTGGGTGCGCGAGCAGCACCCCGACAGCGGAGAGGAGGTGGTGGCACTGCTGGAGTACTTGGACAGGCAGCTGGATGAGACCCCTCCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000055000-0-4,2-4-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.313
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0202312=SCAN=PU(97.9=67.6)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGCCTAGAGAAGCCGGAAGT
R:
AGGACTGCCCAGCCAACT
Band lengths:
292-572
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]