RnoEX0101933 @ rn6
Exon Skipping
Gene
ENSRNOG00000055000 | Zkscan3
Description
zinc finger with KRAB and SCAN domains 3 [Source:RGD Symbol;Acc:1305753]
Coordinates
chr17:45247794-45254445:+
Coord C1 exon
chr17:45247794-45247823
Coord A exon
chr17:45248885-45249398
Coord C2 exon
chr17:45253971-45254445
Length
514 bp
Sequences
Splice sites
3' ss Seq
ATCCTTTGTTCTTTTTACAGGTG
3' ss Score
11.54
5' ss Seq
AATGTAAGT
5' ss Score
8.62
Exon sequences
Seq C1 exon
GCGGGGTGCTACGAGGTGCTGCGTTCGCGG
Seq A exon
GTGTTTAAAGCTAATATTGACCATATACAGTTGACCATTGTCATTGAGTTGATGCCCTTGGGATCTTTGAAAATCCTTTCATCTTCCTTCTTTTTCTTAAGAAATTTGGGTCTTTAACCTCCTCAGGGTGTACAGGGATCCCTGGAGCATTCTTTTGTCTATTTGTAACTTAACAAAAAACAAAAACAAAAACAAAAACCTTGTCTTTGGTTTACTTATTTGGCAAATGCTTGTGTTGGTAAACAATCTTCTGATCCTGTACCTTTGTACTCTGCCCAGTTAGTGAGACTCCAGATGGGAGGGCTGATGAAACGTGAGTGCATGAAATGATTGTTAAAAATGTATCAGTGTTCATTTTTCTCCCTACAGCTTCTCCCAACAGCACCACTCCCTTTCAGCCTCAGATCTACTCTTACCTCCCTTGGCCCCAACAAAATGCTTTGGACTGTACTCAGGAAAGAAAGAAGATAGGATTTTGTCTACTATTTAAAATTACATTAGTAAAGGTTTAAAT
Seq C2 exon
TATTTTGCAGAAATACAACTCACAACTACATTGAAACAGGAGAACTGCTTGGTTCGGGATGGCTAGAGAATCAAGGGAAAGCACAACCCTGGACTCACACTCTGCAGAGGACCAGATGGAGCTACTGGTCATAAAGGTGGAACAAGAAGAGGTCTCCCCATTGGCAGAGGAGACCAGTTGGCTGGGCAGTCCTGGGCCTGACCGCTCCCGCCAGCGCTTCCGTGCTTTCCGCTACCCAGACGCAGCAGGGCCCCGGCAGGCGCTGAGCCGGCTCCGCGAGCTATGCAGACAGTGGCTGCGGCCAGACATGCACAGCAAGGAGCAGATCCTGGAGCTGCTGGTGCTGGAGCAGTTCCTGACCATCCTGCCAGGGGAGCTGCAGGCCTGGGTGCGCGAGCAGCACCCCGACAGCGGAGAGGAGGTGGTGGCACTGCTGGAGTACTTGGACAGGCAGCTGGATGAGACCCCTCCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000055000_MULTIEX1-2/2=C1-C2
Average complexity
C1*
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.313
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0202312=SCAN=PU(97.9=67.6)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTACGAGGTGCTGCGTTCG
R:
GATCTGCTCCTTGCTGTGCAT
Band lengths:
350-864
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]