MmuEX1028798 @ mm10
Exon Skipping
Gene
ENSMUSG00000021327 | Zkscan3
Description
zinc finger with KRAB and SCAN domains 3 [Source:MGI Symbol;Acc:MGI:1919989]
Coordinates
chr13:21396100-21402755:-
Coord C1 exon
chr13:21402672-21402755
Coord A exon
chr13:21401310-21401622
Coord C2 exon
chr13:21396100-21396577
Length
313 bp
Sequences
Splice sites
3' ss Seq
ACCCTTTGTTCTTTTTGCAGGTT
3' ss Score
11.92
5' ss Seq
AACGTGAGT
5' ss Score
9.54
Exon sequences
Seq C1 exon
GGAAGTGCTCTGTGCCCCGCCCCCCGGGGTCGGACTTTCGACACTTTTGTGACTGCGGGGTGCTACGAGGTGCTGCGTTCGCGG
Seq A exon
GTTTTTAAAGCTAATATTGACCATACACAGTTTGCCATGGTCATTGAGTTGATGCCTCTTGTGGTCTTTGAAAGTCCTTTCATCTTCCTTCTTTTTCTTAAGGAATTGGATCTTTAACCTCCTGAGGGTATACAGGGATCCCTGAAGCATTCTTTTCTCTATTTGTAACTTAACAAAAAACAAAAACAAAAACAAAACCCTTGTCTTTGGTTTACTTATTTGGCAAACGCCTGTGTTGGTAAACAGTCTTCTGATCCTGTACCTTTGTACTCTGCCCAGCTGGTGAGACTCCAGATAGGCAAGCTGACAAAAC
Seq C2 exon
TAGTCTTTTACAGAAATACAACTCACAGCTACAGTGAAACGGGAGAACTGCTTGGTTCGGGATGGCTAGAGAATCAAGGGAAAGCACAACCTTGGACTCACACTCTGCAGAGGACCAGATGGAGCTACTGGTCATAAAGGTGGAACAAGAAGAGGCCTCCCCCTTGGCAGAGGAGACCAGTTGGCTGGGCAGTCCTGGGCCTGACCGCTCCCGCCAGCGCTTCCGTGCTTTCCGCTACCCAGAGGCAGCCGGGCCCCGGCAGGCGCTGAGCCGGCTCCGCGAGCTCTGCAGACAGTGGCTGCGGCCAGACATGCACAGCAAGGAGCAGATCCTGGAGCTGCTGGTGCTGGAGCAGTTCCTGACCATCCTGCCAGGGGAGCTGCAGGCCTGGGTGCGCGAGCAGCACCCCGACAGCGGGGAGGAGGTGGTGGCGCTGCTGGAGTACTTGGACAGGCAGCTGGATGACACACCTCCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000021327_MULTIEX1-2/3=C1-3
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.331
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0202312=SCAN=PU(97.9=67.6)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTACGAGGTGCTGCGTTCG
R:
GATCTGCTCCTTGCTGTGCAT
Band lengths:
353-666
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types