HsaEX0073415 @ hg38
Exon Skipping
Gene
ENSG00000235109 | ZSCAN31
Description
zinc finger and SCAN domain containing 31 [Source:HGNC Symbol;Acc:HGNC:14097]
Coordinates
chr6:28336790-28353952:-
Coord C1 exon
chr6:28353862-28353952
Coord A exon
chr6:28337756-28337893
Coord C2 exon
chr6:28336790-28336943
Length
138 bp
Sequences
Splice sites
3' ss Seq
ATATTTTTTATTTTTTGCAGAGA
3' ss Score
9.14
5' ss Seq
TATGTTTGT
5' ss Score
-8.43
Exon sequences
Seq C1 exon
CCCCGAGTGTTCTTTCAACTACCTGCCACCCATCCAACAACTCCCCTCGGACCTCAGTATGGGCTGGAACCTGACACTTGGCATGACAGTG
Seq A exon
AGACAGAGTCTCACTATGTCGCCCAGGCTTGTCTTGAACTCCTGGACTCAAGAGATCCTCCCATCTCGGCCTCTCAAAGTGTTGGGATTACAGGCGTGAGCTATTACACCTGACTTAAGTCTCCATTTTCATATCTAT
Seq C2 exon
ACTTTGGGATTCCAGAAGACAGAGGTTTGAGTGTAAAACACAAAATAACAAAACCACAACAAAAACAACTCTGTATTCTCGTCCCCACCATTACCATCTCTCCTTTGTGATGTCAAAGAGACCAGAGGAAGTGGACAGACTCGGGGAAGAATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000235109_MULTIEX1-3/7=C1-4
Average complexity
C2*
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=0.073 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCCGAGTGTTCTTTCAACTACC
R:
TTCTTCCCCGAGTCTGTCCAC
Band lengths:
242-380
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development