HsaEX0072825 @ hg38
Exon Skipping
Gene
ENSG00000189298 | ZKSCAN3
Description
zinc finger with KRAB and SCAN domains 3 [Source:HGNC Symbol;Acc:HGNC:13853]
Coordinates
chr6:28349950-28359988:+
Coord C1 exon
chr6:28349950-28350067
Coord A exon
chr6:28350272-28350388
Coord C2 exon
chr6:28359525-28359988
Length
117 bp
Sequences
Splice sites
3' ss Seq
TATGGGTGTCCCTTGTTTAGGGC
3' ss Score
9.12
5' ss Seq
AAGGTCAGT
5' ss Score
8.68
Exon sequences
Seq C1 exon
AGTTTCAAGCACTTTGTGAGTATGGGGTGAATCGGCGTCGGCCTTCCACTGTGGGGTTAAATCTCATCCCGCGGCTCTCCTCCTGTCGGTCCTGCAGTTCTTTTGTCCCCGGGTAGAG
Seq A exon
GGCCGTTACCGAGTGTCCGGGTCGGTTCTTGAGGGTATTTGGAGACGGGATGCATGGGTCACATAGACAAGCCTCGAGAATGGGAGCCGTTACATTTTTGCACTGCCTGGTAACAAG
Seq C2 exon
GGATCTTCTGCAGAAATAGCGCTGGAAGCTAGAGTGAGGCCTGAGTACTGCCTTGGCCTAGGATGGCTAGAGAATTAAGTGAAAGCACAGCCCTGGATGCCCAGTCTACAGAAGACCAGATGGAGCTTCTGGTCATAAAGGTGGAGGAAGAAGAAGCCGGTTTTCCCAGTAGCCCAGATCTGGGTTCTGAGGGCTCCCGCGAGCGCTTCCGAGGCTTCCGCTACCCGGAGGCTGCAGGCCCCCGCGAGGCGCTGAGTCGGCTCCGAGAGCTCTGCCGACAGTGGCTGCAGCCTGAGATGCACAGCAAGGAGCAGATCCTGGAGCTGCTGGTGCTGGAGCAGTTCCTGACCATCCTGCCGGGGAATCTGCAGAGCTGGGTGCGGGAGCAGCATCCAGAGAGCGGGGAGGAGGTGGTGGTGCTATTGGAGTATTTGGAGAGGCAGCTGGATGAGCCGGCGCCGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000189298_MULTIEX1-1/4=C1-2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
Show structural model
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.241
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0202312=SCAN=PU(97.9=70.1)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGTTAAATCTCATCCCGCGG
R:
CCAGATCTGGGCTACTGGGAA
Band lengths:
248-365
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development