MmuINT0180355 @ mm9
Intron Retention
Gene
ENSMUSG00000021327 | Zkscan3
Description
zinc finger with KRAB and SCAN domains 3 [Source:MGI Symbol;Acc:MGI:1919989]
Coordinates
chr13:21487969-21494624:-
Coord C1 exon
chr13:21494541-21494624
Coord A exon
chr13:21488447-21494540
Coord C2 exon
chr13:21487969-21488446
Length
6094 bp
Sequences
Splice sites
5' ss Seq
CGGGTGGGT
5' ss Score
6.14
3' ss Seq
TGGTTCTCTCCACCTCTCAGTAG
3' ss Score
4.84
Exon sequences
Seq C1 exon
GGAAGTGCTCTGTGCCCCGCCCCCCGGGGTCGGACTTTCGACACTTTTGTGACTGCGGGGTGCTACGAGGTGCTGCGTTCGCGG
Seq A exon
GTGGGTTTGGGTCCCGTCCTGTTACCGTCCTCCCGCAGGGGTCGGCTGCTTGTGGGGGTTGGGGGTGGGACAAAACATCTTCCTCCGCGGCCTAGTGGCGCCGAGAAGATAAACTCGGTGGCCACTTGGGCCGAGCGCCCGACAGGGCCTCGGGCGCCTCGCCTCAGGCCGGTTCCGGGTGTCTGGTCAGTCTCAGGGCGTTTGGCGATGGGATTCTCGGGTCTTGTACTTAAGCTTTGAAAATGGGAGACGTCACAGTTTTGCTTTTCCTGGAGACAAGGTCAGTTCCAAGGTCTTTATTCTGGGGTACTGGAAGAGAGCCAGAACTTTGGAATCGGGTTGCTTGGTCGAATCTGGCCTCAGCTCCTTTGTGACTTCTCCCCCCAGTCCCTTAACCTTTCTGTGTTTTGCTATTTTAGGGGATAATGATGTCGCCTAACTTACTGGATTGTTGTGAGGAATAAATGGCTTCATTTGTGCAAAGGTGCTTAAAATAGTACCAGGCACGGGGTAATCTGCACAGTGTAAAGATAGCTGTTATTATTCCTGTTGCTTTTCCTAACTAGGACAGCACTTTCTCTTCATCGATCAGCCTTGGTACTGGCTGTTGTCTTTTGAATGTTAGTACTATTTATCAGTTCTCTTTATAATGAATGATTTCTGTATTTTAGGAGGGAAAATAGAACATTCTGGAAAAGAGCCTATCCCACAGCAAAGAGTAAAAGTGGTTTGTGTAGTGTCTTGTAATGGTCAGGCTCACAGAGGTTTAAAATCCTGGGGATGCCTTTTTTTTTTTTTTTTTTTTTTTTTGGTGGGAGGAGGAGCTTGAGAAACAGGAGGAGCGTCTAACCGCGAAGGATTAGGACCCTGTTGTAAGCAGACATTGCTGCCGACCTGCCAGCTTTCTGACCCTCAGCGAGATTCCTCTCCAGTGTGAGAACCACACGGACGGCTGATAGTTAGAAGTGATGATAGGTAGATTGGCGATAGATTAGAGATAAGTCGATCTGATCCTGAGTTCCCACTAACACCCTTTGTTCTTTTTGCAGGTTTTTAAAGCTAATATTGACCATACACAGTTTGCCATGGTCATTGAGTTGATGCCTCTTGTGGTCTTTGAAAGTCCTTTCATCTTCCTTCTTTTTCTTAAGGAATTGGATCTTTAACCTCCTGAGGGTATACAGGGATCCCTGAAGCATTCTTTTCTCTATTTGTAACTTAACAAAAAACAAAAACAAAAACAAAACCCTTGTCTTTGGTTTACTTATTTGGCAAACGCCTGTGTTGGTAAACAGTCTTCTGATCCTGTACCTTTGTACTCTGCCCAGCTGGTGAGACTCCAGATAGGCAAGCTGACAAAACGTGAGTGTGTGAAGCCGTTATTAAGAATGTATCAGTGTTCATTTTTCTAGCCTCAGCTCTACTCTTCTTCCTTGATCCCAACAAAATGCTTTGGCCTGTACTCAGGAAAGAAAGAAGATAAGGTTTTGTTTACTATTTAAAATGACATTAGTAAAGATTTGAATGTGAATCAGAGAGAAACTCCATCTCACCTGCAGTAGTAGGCCCACCATTCAGCCATAAATCTTATAGTCCTCTTCAGTCATGCTTTTCCTGCCTTTCCCCCATCCGTCCTTACCAGCCTCCCTTTTCCTTCCTTTTCCTGCTCTCCTTCCCCTGTCTTTCTTTCATTCTTTTTACAGCTAACTAGAGGCCAAGACAACAGATCCCTTCATCTGCAGGTACAGCAATGTGCTATAAAGTAGGAGCTTTAATTTAGACATACTATCATGAACAGAATTGATAGTAATTCCTTAATATTGCATTCATGCTTTCCTGATTGACCCAAAAGTATCTTTTTACAGTTAGAGCATACTATATTTAAACTACATAGTACGTATAGAATTGCTGTCCCTTGTAATCTATGATAGTCCACCTTCCTTTTGCTTCCTCTTTAAAAATAACATTTATTTGTGGAAGAACTTGGGTTTTCAATATTCTCACATCAGTTGCTTTATTCTACTGATACTTTGAGGGGGGGGGAGAGGATCTTCTCTTTAGCTTCTTAGTTCTCAAACTTGGCTGCACTTTGGATCACACACTAAGTTCTCAGGTACTGAGGCCTGTGACCCACCCCCAGAGGCTAGTTCAATTCTCCTTGACTGTCCAACTATTAGGAGGCTTTCGAAGCTTCCCAGTGGTTCTCTTGCATACTATAACTTTAATCTTTTAATTTGTTCTTGTGTTTTTTCCTGTACATGAGTTCATGGATATAGAGGCTTGATTAAATTTAGGTTTACTTATTTGACTAAAATTATATTATTTCAGCTCTCTTGTGGCAGCTAATTAGGAAGTATTTCTGGATTCTTCGTAAGAGTTCACCCAGGTGTGATGGTTCACAGCAGGACTCTCCACTCTTGGGAGCTGAGGCAGGAAGATTGCCGAGAGGAAAAAGAAAAAACAATGAATGAGTTGAGGTTCCTGAACTTCTGTCAGCCGTGTTATCTCATAAATCATAGGAAATTGGAGTGAGAAATAGAAATTCAAGTGGGCACAGACTTGGAACTGTCTTTTCCCTTAGTAATTCTAGCTTACCTGTTCCCATCTCATTTCACTGAGTAAAGAGGGATGACCTGCCGTCTCAGTGTACCCACAGAACTTTGCAGTCAGTCCTAGTTTAAAATCTAGTTTGAATCCTGATTCAAAGGAATCAGCTCTTCTGTCCCTTTTAGGTTGCCTAGGTCTCACAGCTTCTGGGAAGCTGTGAATAACTGAGGCATTGACTACTTAAGATGTGACATTTCCAAGGTCATACATCTGATAGAGATAGGGAAAGAGCATTTGTATGTAAATGTTGTCTTATTGCGGTGGCTATGTTCTGCCTTGGGTGGGATTCTCAGCCAGCCTTCTCTGTCATGGACTATGCCAACTTTGGCTGCCTTGTGAGGCACATTGGGCAGCTACTGAATGCCCATTTAACACTTAGAGCTTTTAAGGTTACACAGTGAAGGAAAGGGAGGGTGCTTCCTTTACTCGTTCTGTATGGGTCAGAGAACTGCAGTACATCTGCCCATCCATCTGCTGTCGGTTGTCCAACCATGGAAATAAGCTTGCCTGCCTGTGTACTCTGGAGGCAGGCTTTGTCCTTACCTTCTTACCAGGTAACTCCCTTCTCTGGTTTAAGTTTTCTATAAGCTTATAACACCAAGATGTATCAGCCTGTTTTCCAGTTTTGAAGTTTACATTTGTGTGAGTTGTATGTTTGTGTTCCAATGTTTGTACATGTGTCTATACTGGTACATGCACACATGTGTGAACATGGAAGCCAGAGATCTGTACTAAATGTCTTCTATTGCTTTCCACCTTTATTCTTATTTAATTATCTATGTTTGAGACAGGGTCTCTCACTCTACTTGGAGCTCACCAGTTGGGTAAGAGTTGGCCAGCAACGCTAGGGCTCCTCTCATGTCCACATCCCTCTACAGTGCTGGAATGGCAGGTGCTTGCCGCCCTGTGGTGCTATACATGGTTGCTGAGGATCTGAACTCAGGTCCTCAAGCGTGTGTCGCAGGTACTTTAGTGACTAAGCTGTATTCCTAGCCCCTATATTTGGACTCTCCCAATAGTGGATTTTAGTTCCCAAGGTGACATTTAGCAACTCTGGAGGTGCTATTGTCATCTAGTGGGCACAGACCAGGAGTGCTGCTAACCATTCTAATAGCTATCAGGTAGTCCTGTCTTTTTTATACCATAGAGGTAACCTCACTTAAAATGTCTGAACTTGAGAAAAATGGCCTTGAAATGAATTTTAGAAAAAAAAAAAAGGCATTTGTGTTTATTTAGTCTTTTCTCTAACACAGTAATTATTCTGTTTCTGCTATATATTAATATCTGAGAAATAGAAAAACAAGGTGAGGACATTTGTTTTCAAGAAACTCACAATCCAGTGGGCTAGACAATCTATTTAGAAAGATAGTTTTAGTATATACCATGAATTGCCCTAGATTTCACTATGTAGACTAGGCTGGCATTAAACATGCAGCTCTCCTCCTGTCTCTGTCTGATGAGTGCTGGGGATTACAAGTATCCTCCATCAAGCCTGGCTGACAGGTTTTATTTGGCATTCCCAAAGTTCTAGCAGGGGGTTGTAGAAACTAGTACTAGCTTGAATGAAAACATACATGCCCTGGTTAGGAATTTTAGATCACTGCCTGTTCGAAGCTTGGGAGAATAGGGTAGGAAAGCATGTATTTGTGTTGAGTAGGCTGGAAATGATAATGCTAAATAGCTGTGAGGCTAGAGACACAGCAGATCTGAGAGACATTCTAGGGTAGAGCAGATTGGAGTAGATGATTTATGTTGAAACTGAGAAGAGGCAGTTACATGATTATGAGGATGCCTATGGGTAGAGCTGCAACATGTAGAGAATGCTGCAATGGGAAAGTGGGAGAAAGCAAGAGAATTAGCCTTGTTTGAAGCATGTTGACTTAGGTTTGTTTGTAAAATTTCCACTTAGAACTATCTGGGCAGCAACTCAAGATAGGGATCAAGAGTCTTTAAGAAATAGGAGCTAAATAAAATCTTGCAAGAGACTCAAGAATATGGGGCAGGGGGGTCAAGAACAGAATGCCAAAGCCCATTCTTACTTAAAAGGAGAAAGGCCGTAAACTGTTTTATGTACTTTATGTACTTTATTAGTTGGCAGTAATATCTACTCATCACATGCTAACCACTATTCCCAGTGCTCACATTTCTATCTGTTGTCCCTAACCTGTTAACATATGAGGAAATCAAGGCACAGAGATGAGTGATTTACCAAAGTCACCCATTTGGCTTGAGCCAAACCAGAATTGAGATCAGGAATCTTAGCTTTGGGGTCTACATACCTAATCAGACTGAAGGAGGGCATTAAAGAGACAATAAAGAGGCAACAGAAGAAAAAAGGTCCCATAACCCAGGGACAAGAGAGTTTCTAGACACAAACAGTAACTTCAGCCTGATTACCTGAGCAGCTGTGGAACACAGGAACTGAAAGAAGCTTTTTTGGGTACAAAGGCGTTATGATCTATATCTATGTTGAGACCTTGGCAGAAAGAAAACGAGAGTTGGAGTCAGGGGGCCTTTGGTCCTGAAGGATAGCAGACTGGCTAGGTGGGATCTTGCCCTCATGGAGCTTTTCCTATTTTCTAGATGTAAAACACAAGATTTCTCTTTATGATGCTAGCTTGACAATTACACAAGCTTAAATCTACATTCACCTCATTGTTAACCTTACACTAGTACACAATCTTTTCTTAAGCAAACCACATTTTTCATATACTTTTGGTCTCTCCCTATGGATTTGAATAAGAGCAGTGAACACTAGTCATGGCACAGCCTGAATGCTATCCTGTTTAAAATTTCTTCTGCTAAATTACTCCATTGTTTTTTAATTCACTCTCAAGTTCTCTTAGCAAGGACAGAATGCAGCTAGATACTCTGCCAGGATGTAACAAACAGATTTTACCAGCTAGGCCTCCTCTGCTCAGGCATTCTAGAATTCCAAACTCCCACCAGAATGGCCTAGTAAGCTTTACTTATATACATAGGGTCTTACCCTACAGCTGCAAACTGTTCTCTCCACAAACCAGTCCACAGTTGTAAGAAACACATGGTCAAGTTTATCACAGCAATGGCCTCTGCTCTGCACTAGTTACATTACTTTCTTGTTGCAATGACAAAATACCAACAGAAGCAAACAAAGTTTATTTTGGTTGACAGTTAGAGGGTACAATCCATCATGGGAGCAGCTACTCACATTCTGTCCAGTGAGGAAACAGAGAGGTACGCTGGTTCCCCATTTGCTATCACCTTGACTGCGCCCCGAGCCCATGGAATCATGCCACCCACAGTCATTAGGGTCTTCTGACTTACATTCAGTCTCTCCAGAACACCCTCACAGACATTTATGATTCTAAGTCCCACAAGATGACACAGAGACATTTGAACGTGGGGATCTCCTCAGCTGCTCTTTGGCAGTTTCCTTGGAGTCCTGGGCCTAGGAGGAGGGGAACATTTGCAACTATAGTGGCTTATGGTTCTCTCCACCTCTCAG
Seq C2 exon
TAGTCTTTTACAGAAATACAACTCACAGCTACAGTGAAACGGGAGAACTGCTTGGTTCGGGATGGCTAGAGAATCAAGGGAAAGCACAACCTTGGACTCACACTCTGCAGAGGACCAGATGGAGCTACTGGTCATAAAGGTGGAACAAGAAGAGGCCTCCCCCTTGGCAGAGGAGACCAGTTGGCTGGGCAGTCCTGGGCCTGACCGCTCCCGCCAGCGCTTCCGTGCTTTCCGCTACCCAGAGGCAGCCGGGCCCCGGCAGGCGCTGAGCCGGCTCCGCGAGCTCTGCAGACAGTGGCTGCGGCCAGACATGCACAGCAAGGAGCAGATCCTGGAGCTGCTGGTGCTGGAGCAGTTCCTGACCATCCTGCCAGGGGAGCTGCAGGCCTGGGTGCGCGAGCAGCACCCCGACAGCGGGGAGGAGGTGGTGGCGCTGCTGGAGTACTTGGACAGGCAGCTGGATGACACACCTCCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000021327-Zkscan3:NM_001145778:1
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.328
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0202312=SCAN=PU(97.9=67.6)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: