HsaEX0072831 @ hg19
Exon Skipping
Gene
ENSG00000187626 | ZKSCAN4
Description
zinc finger with KRAB and SCAN domains 4 [Source:HGNC Symbol;Acc:13854]
Coordinates
chr6:28217465-28231397:-
Coord C1 exon
chr6:28226957-28231397
Coord A exon
chr6:28219336-28219819
Coord C2 exon
chr6:28217465-28217612
Length
484 bp
Sequences
Splice sites
3' ss Seq
AAAATTTACCACCCTTCCAGAAT
3' ss Score
5.84
5' ss Seq
CAGGTAGAA
5' ss Score
6.68
Exon sequences
Seq C1 exon
CTGCATAGCAGTGACGATGGTAGCGATATCCACTATACGAGGTCGACCAGGAGGACGCGAAGGCGTAGTTGCGGAATCTTGGGAGCCGCCCTCGCGACCCAGAGCGACTAAAGGGGTAAAGAGCGCCCACGTCCAACTCACTCCAAGGAGGCCTGAGGCCCTCACGGCCGCGGGAGTGAGAGCGGGAACAGCCATCCCAAGAGGAACATCTGCTCTGCGGGGATGGTGGGCTCCCCGAGGAGCTGCGTCGCCTTCTCCGAGAGCCCACGATGTCCTCGGAATAGCTGGACCGGGATACTGGGGGCATGAGCCGCGCCTCAACGCTGGGCGGTTGCTACAGACCCAGAGGCTGGCTGGTGATTCGCGGCCACGCAGGCGCACTAGAATCGGCCTCCCACGCACGGCTTCCGCTTCCTGTCAGTTACCAAACGGAAAACGAATCCGCGCGTGTGCTATGTGGGGCGGGCCTTGGCTGCGTGAAGGCTTCTTGTGGGAAGTAG
Seq A exon
AATCCTCTGAAGATATACAGGTCGCAACTAGAGTGAGACCCGAGTACTGCCTTGGGTCAGAATGGCTAGAGAACCGAGAAAAAACGCAGCCCTGGACGCCCAGTCTGCAGAAGACCAGACGGGGCTCCTGACCGTGAAGGTGGAGAAGGAGGAAGCCTCCGCCTTGACGGCGGAGGTGAGAGCACCCTGCAGCCCTGCTCGGGGCCCCGAACGCTCCCGCCAGCGCTTCCGAGGCTTCCGCTACCCGGAGGCTGCGGGCCCCCGCGAGGCGTTGAGCCGGCTCCGAGAACTCTGCGGACAATGGCTGCAGCCTGAGATGCACAGCAAGGAGCAGATCCTGGAGCTGCTGGTGCTGGAGCAGTTCCTGACCATCCTGCCGGGGAATCTGCAGAGCTGGGTGCGGGAGCAGCATCCAGAGAGCGGGGAGGAGGTGGTGGTGCTATTGGAGTATTTGGAGAGGCAGCTGGATGAGCCGGCGCCGCAG
Seq C2 exon
GTTCCCGTTGGTGACCAGGGGCAAGAACTGCTCTGTTGCAAGATGGCACTATTGACACAAACTCAAGGGTCTCAAAGTAGCCAGTGCCAGCCAATGAAGGCTCTGTTCAAGCATGAATCTCTGGGATCCCAGCCCTTACACGATAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000187626_MULTIEX1-2/5=C1-3
Average complexity
C1*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. ATG)
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.365 C2=0.071
Domain overlap (PFAM):
C1:
NA
A:
PF0202312=SCAN=PU(97.9=66.7)
C2:
PF0202312=SCAN=PD(0.1=0.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGAATAGCTGGACCGGGATA
R:
TGGGATCCCAGAGATTCATGCT
Band lengths:
355-839
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)