HsaEX0072831 @ hg38
Exon Skipping
Gene
ENSG00000187626 | ZKSCAN4
Description
zinc finger with KRAB and SCAN domains 4 [Source:HGNC Symbol;Acc:HGNC:13854]
Coordinates
chr6:28249687-28253031:-
Coord C1 exon
chr6:28252807-28253031
Coord A exon
chr6:28251558-28252041
Coord C2 exon
chr6:28249687-28249834
Length
484 bp
Sequences
Splice sites
3' ss Seq
AAAATTTACCACCCTTCCAGAAT
3' ss Score
5.84
5' ss Seq
CAGGTAGAA
5' ss Score
6.68
Exon sequences
Seq C1 exon
ATTGGAAAAGTCGGGCACAGGGAGGGTAAGCCAGGATTACACAGGTAACCTGGCTACCTGCGTATCTAGCCACTGTGCTTGACTGTGATTGGGGGCTGGGAAGAAACAGGAAGGAAGAAAGCAGAAGAGAATGGGGTCCCTGAAGCCAGAGACTAGAGAGTTTCTGGAGGTGGAGAGCAGCATAAGCCTGATTGCCAGAGAAGCAGCCATGGAATGTGCAAAGTG
Seq A exon
AATCCTCTGAAGATATACAGGTCGCAACTAGAGTGAGACCCGAGTACTGCCTTGGGTCAGAATGGCTAGAGAACCGAGAAAAAACGCAGCCCTGGACGCCCAGTCTGCAGAAGACCAGACGGGGCTCCTGACCGTGAAGGTGGAGAAGGAGGAAGCCTCCGCCTTGACGGCGGAGGTGAGAGCACCCTGCAGCCCTGCTCGGGGCCCCGAACGCTCCCGCCAGCGCTTCCGAGGCTTCCGCTACCCGGAGGCTGCGGGCCCCCGCGAGGCGTTGAGCCGGCTCCGAGAACTCTGCGGACAATGGCTGCAGCCTGAGATGCACAGCAAGGAGCAGATCCTGGAGCTGCTGGTGCTGGAGCAGTTCCTGACCATCCTGCCGGGGAATCTGCAGAGCTGGGTGCGGGAGCAGCATCCAGAGAGCGGGGAGGAGGTGGTGGTGCTATTGGAGTATTTGGAGAGGCAGCTGGATGAGCCGGCGCCGCAG
Seq C2 exon
GTTCCCGTTGGTGACCAGGGGCAAGAACTGCTCTGTTGCAAGATGGCACTATTGACACAAACTCAAGGGTCTCAAAGTAGCCAGTGCCAGCCAATGAAGGCTCTGTTCAAGCATGAATCTCTGGGATCCCAGCCCTTACACGATAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000187626_MULTIEX2-2/3=1-C2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. ATG)
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.340 C2=0.074
Domain overlap (PFAM):
C1:
NA
A:
PF0202312=SCAN=PU(97.9=66.7)
C2:
PF0202312=SCAN=PD(0.1=0.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGGGAGGGTAAGCCAGGATT
R:
ATCGTGTAAGGGCTGGGATCC
Band lengths:
352-836
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development