HsaEX0072933 @ hg19
Exon Skipping
Gene
ENSG00000163867 | ZMYM6
Description
zinc finger, MYM-type 6 [Source:HGNC Symbol;Acc:13050]
Coordinates
chr1:35484954-35486068:-
Coord C1 exon
chr1:35485984-35486068
Coord A exon
chr1:35485862-35485880
Coord C2 exon
chr1:35484954-35485203
Length
19 bp
Sequences
Splice sites
3' ss Seq
ATGTCTTTCTCTTTCTTTAGAGC
3' ss Score
11.21
5' ss Seq
ACTGTGAGT
5' ss Score
7.94
Exon sequences
Seq C1 exon
GAGTATGGATGTGTCCAACAGCCAAAAACTCAAGAAAGTAAATTGAAAATTGGTGGTGTGTCTTCAGTTAATGAGAGACCTATTG
Seq A exon
AGCTGTGTTTTTTCAAACT
Seq C2 exon
CCCAGCAGTTGAACCCAGGCTTTCAGCTTTCTTTTGCATCATCTGGCCCAAGTGTGTTGCTTCCTTCAGTTCCAGCTGTTGCTATTAAGGTTTTTTGTTCTGGTTGTAAAAAAATGCTTTATAAGGGCCAAACTGCATATCATAAGACAGGATCTACTCAGCTCTTCTGCTCCACACGATGCATCACCAGACATTCTTCACCTGCCTGCCTGCCACCTCCTCCCAAGAAAACCTGCACAAACTGCTCGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000163867-'6-9,'6-8,7-9
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.337 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF064679=zf-FCS=WD(100=48.8),PF064679=zf-FCS=PU(27.3=14.3),PF060447=DRP=PU(14.1=10.7)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGTCCAACAGCCAAAAACTCA
R:
GCTGAAAGCCTGGGTTCAACT
Band lengths:
102-121
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)