HsaEX0072933 @ hg38
Exon Skipping
Gene
ENSG00000163867 | ZMYM6
Description
zinc finger MYM-type containing 6 [Source:HGNC Symbol;Acc:HGNC:13050]
Coordinates
chr1:35019353-35020467:-
Coord C1 exon
chr1:35020383-35020467
Coord A exon
chr1:35020261-35020279
Coord C2 exon
chr1:35019353-35019602
Length
19 bp
Sequences
Splice sites
3' ss Seq
ATGTCTTTCTCTTTCTTTAGAGC
3' ss Score
11.21
5' ss Seq
ACTGTGAGT
5' ss Score
7.94
Exon sequences
Seq C1 exon
GAGTATGGATGTGTCCAACAGCCAAAAACTCAAGAAAGTAAATTGAAAATTGGTGGTGTGTCTTCAGTTAATGAGAGACCTATTG
Seq A exon
AGCTGTGTTTTTTCAAACT
Seq C2 exon
CCCAGCAGTTGAACCCAGGCTTTCAGCTTTCTTTTGCATCATCTGGCCCAAGTGTGTTGCTTCCTTCAGTTCCAGCTGTTGCTATTAAGGTTTTTTGTTCTGGTTGTAAAAAAATGCTTTATAAGGGCCAAACTGCATATCATAAGACAGGATCTACTCAGCTCTTCTGCTCCACACGATGCATCACCAGACATTCTTCACCTGCCTGCCTGCCACCTCCTCCCAAGAAAACCTGCACAAACTGCTCGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000163867_MULTIEX1-5/9=4-6
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.316 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF064679=zf-FCS=WD(100=48.8),PF064679=zf-FCS=PU(27.3=14.3)
Main Inclusion Isoform:
ENST00000357182fB8042
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGTCCAACAGCCAAAAACTCA
R:
GCTGAAAGCCTGGGTTCAACT
Band lengths:
102-121
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development