HsaEX0072934 @ hg38
Exon Skipping
Gene
ENSG00000163867 | ZMYM6
Description
zinc finger MYM-type containing 6 [Source:HGNC Symbol;Acc:HGNC:13050]
Coordinates
chr1:35014988-35020467:-
Coord C1 exon
chr1:35020383-35020467
Coord A exon
chr1:35019552-35019602
Coord C2 exon
chr1:35014988-35015162
Length
51 bp
Sequences
Splice sites
3' ss Seq
TTTTTATTTTGTTTTGATAGCCC
3' ss Score
7.29
5' ss Seq
CAAGTGTGT
5' ss Score
3.84
Exon sequences
Seq C1 exon
GAGTATGGATGTGTCCAACAGCCAAAAACTCAAGAAAGTAAATTGAAAATTGGTGGTGTGTCTTCAGTTAATGAGAGACCTATTG
Seq A exon
CCCAGCAGTTGAACCCAGGCTTTCAGCTTTCTTTTGCATCATCTGGCCCAA
Seq C2 exon
AGACATTTTAAATCCTAAGGATGTGATCACAACTCGCTTTGAGAATTCCTATCCTAGCAAAGATTTCTGCAGCCAATCATGCTTGTCATCTTATGAGCTAAAGAAAAAACCTGTTGTTACCATATATACCAAAAGCATTTCAACTAAGTGCAGTATGTGTCAGAAGAATGCTGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000163867_MULTIEX1-6/9=4-7
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.316 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF064679=zf-FCS=WD(100=48.8),PF064679=zf-FCS=PU(27.3=14.3)
C2:
PF064679=zf-FCS=PD(70.5=52.5)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTCCAACAGCCAAAAACTCA
R:
GGCTGCAGAAATCTTTGCTAGG
Band lengths:
148-199
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development