HsaEX0072984 @ hg19
Exon Skipping
Gene
ENSG00000090612 | ZNF10
Description
zinc finger protein 268 [Source:HGNC Symbol;Acc:13061]
Coordinates
chr12:133707423-133721111:+
Coord C1 exon
chr12:133707423-133707600
Coord A exon
chr12:133720106-133720208
Coord C2 exon
chr12:133721020-133721111
Length
103 bp
Sequences
Splice sites
3' ss Seq
CTAGGAGACCTCCGTTACAGGAA
3' ss Score
1.95
5' ss Seq
TAGGTAAAT
5' ss Score
6.62
Exon sequences
Seq C1 exon
CTTCGTATTTCTAGGTAGACGGTAATTTCGTCAATGAAAAAATTTAACGGTGATCGTCACCCCTTGCCTCAGTCACTTTCTGTCCCTCGCGCGGCCCCGGCGTTCACGGCGGACGTTCTTGTTCTGTGGAGAATAACGGCTGCACCTGGAGATTGACGCAGAGTGGGCGGCGGTGGTG
Seq A exon
GAAACATTAAAGAATGTGCTTCAGAGAGAAAGGAAATGAAACCAAATGGAAATCTGGATCTACACAAACGAGTAAACAGCACTGGCGAATGGTAACTACCTAG
Seq C2 exon
CTTTGTCTCCTCAGCACTCTGCTGTCACTCAAGGAAGTATCATCAAGAACAAGGAGGGCATGGATGCTAAGTCACTAACTGCCTGGTCCCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000090612-'1-3,'1-2,3-3
Average complexity
C1*
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTCGTATTTCTAGGTAGACGGT
R:
TCCATGCCCTCCTTGTTCTTG
Band lengths:
242-345
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)