HsaEX0072984 @ hg38
Exon Skipping
Gene
ENSG00000256223 | ZNF10
Description
zinc finger protein 10 [Source:HGNC Symbol;Acc:HGNC:12879]
Coordinates
chr12:133130837-133144525:+
Coord C1 exon
chr12:133130837-133131014
Coord A exon
chr12:133143520-133143622
Coord C2 exon
chr12:133144434-133144525
Length
103 bp
Sequences
Splice sites
3' ss Seq
CTAGGAGACCTCCGTTACAGGAA
3' ss Score
1.95
5' ss Seq
TAGGTAAAT
5' ss Score
6.62
Exon sequences
Seq C1 exon
CTTCGTATTTCTAGGTAGACGGTAATTTCGTCAATGAAAAAATTTAACGGTGATCGTCACCCCTTGCCTCAGTCACTTTCTGTCCCTCGCGCGGCCCCGGCGTTCACGGCGGACGTTCTTGTTCTGTGGAGAATAACGGCTGCACCTGGAGATTGACGCAGAGTGGGCGGCGGTGGTG
Seq A exon
GAAACATTAAAGAATGTGCTTCAGAGAGAAAGGAAATGAAACCAAATGGAAATCTGGATCTACACAAACGAGTAAACAGCACTGGCGAATGGTAACTACCTAG
Seq C2 exon
CTTTGTCTCCTCAGCACTCTGCTGTCACTCAAGGAAGTATCATCAAGAACAAGGAGGGCATGGATGCTAAGTCACTAACTGCCTGGTCCCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000256223_MULTIEX1-3/9=1-5
Average complexity
C2*
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTCGTATTTCTAGGTAGACGGT
R:
TCCATGCCCTCCTTGTTCTTG
Band lengths:
242-345
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development