HsaEX1044792 @ hg38
Exon Skipping
Gene
ENSG00000256223 | ZNF10
Description
zinc finger protein 10 [Source:HGNC Symbol;Acc:HGNC:12879]
Coordinates
chr12:133130837-133139249:+
Coord C1 exon
chr12:133130837-133131014
Coord A exon
chr12:133135283-133135601
Coord C2 exon
chr12:133139199-133139249
Length
319 bp
Sequences
Splice sites
3' ss Seq
CATCTTTTGTTCTTACACAGCAG
3' ss Score
7.07
5' ss Seq
TCGGTATCC
5' ss Score
3.09
Exon sequences
Seq C1 exon
CTTCGTATTTCTAGGTAGACGGTAATTTCGTCAATGAAAAAATTTAACGGTGATCGTCACCCCTTGCCTCAGTCACTTTCTGTCCCTCGCGCGGCCCCGGCGTTCACGGCGGACGTTCTTGTTCTGTGGAGAATAACGGCTGCACCTGGAGATTGACGCAGAGTGGGCGGCGGTGGTG
Seq A exon
CAGTGACCAAATAGTAAGTTGGGCTCCAAACTCTGCACTGTGAGCTGGGGAAAGGGCACTCAATGCTCCCTGAATACCAAGATCCATTATGCTGCTGCAGCCAAAACAGGAAATAAATAATGCTGGACATCATCAGGCAGAGGATTTGAAACAGCTTTCCTCTGTGGCATCGCAGTGTTCCAGGACTTCGTTATATGAGCTGAGCCTACCTTGCCTTCTCATCTCTGGAGGCTCTTCACTTCACTCTGCTCATGTCATCACTCCTGTGTGTCTCAGACTTCCACTCATGACCCAAACAGCACAGCCTCTGCAAACTTCG
Seq C2 exon
TGGCTGTGGGAGCAAAGAGTAAGAAACACTAAAACTTCCTGGAGAAATTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000256223-'1-5,'1-4,2-5
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTCGTATTTCTAGGTAGACGGT
R:
TCTCCAGGAAGTTTTAGTGTTTCT
Band lengths:
223-542
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains