HsaEX0073035 @ hg19
Exon Skipping
Gene
ENSG00000176293 | ZNF135
Description
zinc finger protein 135 [Source:HGNC Symbol;Acc:12919]
Coordinates
chr19:58570607-58573074:+
Coord C1 exon
chr19:58570607-58570678
Coord A exon
chr19:58571337-58571403
Coord C2 exon
chr19:58572948-58573074
Length
67 bp
Sequences
Splice sites
3' ss Seq
TCACCTCCCCTTTCCCACAGAGC
3' ss Score
12.09
5' ss Seq
CCGGTGAGA
5' ss Score
8.72
Exon sequences
Seq C1 exon
GAAATGGAGTTAGGCTCGCGCCGGCGCAGTGTCGGCTGCCGGTGCCGCGGCCTTTGTCTCGCAGTCAGGAGG
Seq A exon
AGCAGGGCCAGCCGTTCCTGCCAGAAGCCAGGGCATGACCCCTGGGGTGCGCGTCTCCACAGACCCG
Seq C2 exon
GAGCAAGTGACGTTTGAGGACGTGGTAGTGGGCTTCAGCCAGGAGGAGTGGGGGCAGCTGAAGCCTGCCCAGAGGACCCTGTACCGTGATGTAATGCTGGACACCTTCAGGCTTCTGGTCTCTGTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000176293_MULTIEX1-1/5=C1-2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. ATG)
No structure available
Features
Disorder rate (Iupred):
C1=0.019 A=0.664 C2=0.021
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0135222=KRAB=PU(95.1=90.7)
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAATGGAGTTAGGCTCGCGC
R:
GCCTGAAGGTGTCCAGCATTA
Band lengths:
183-250
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)