HsaEX0073035 @ hg38
Exon Skipping
Gene
ENSG00000176293 | ZNF135
Description
zinc finger protein 135 [Source:HGNC Symbol;Acc:HGNC:12919]
Coordinates
chr19:58059269-58061706:+
Coord C1 exon
chr19:58059269-58059310
Coord A exon
chr19:58059969-58060398
Coord C2 exon
chr19:58061580-58061706
Length
430 bp
Sequences
Splice sites
3' ss Seq
TCACCTCCCCTTTCCCACAGAGC
3' ss Score
12.09
5' ss Seq
GAGGTCAGC
5' ss Score
5.66
Exon sequences
Seq C1 exon
GTCGGCTGCCGGTGCCGCGGCCTTTGTCTCGCAGTCAGGAGG
Seq A exon
AGCAGGGCCAGCCGTTCCTGCCAGAAGCCAGGGCATGACCCCTGGGGTGCGCGTCTCCACAGACCCGGTGAGAATCTCGGCCTCCTTGCGCGTGTCCTCCACCTCGTGCCCGGCCTCCTCGCGCGCGGCCTTCTCACGCCCGGCCTCCTCTTTGCACCCCGTCCCTACTCGCGCTCAGCCTCCTCCTTGTGCCCGGCCCCTACTTGCGTGCCCGGCCCCTACTCGTGCCCGGCCTCTACTCGCACAACTGGCCTCTACTCGCGCACCTGGCCTCTACTGGTGCCCGGCCTCTACTCGTGCCCGGCCTCTATTTGCACATCTAGCCTCTACTCGTGTCCGGCCTCTACCTGCACACCCGGCCTCCTAAAGTCCGCGCCAAGCTCCCCAACCACAGCCTGCCTCTGAAAGGACCGCCCACGCCGCGCTGGAG
Seq C2 exon
GAGCAAGTGACGTTTGAGGACGTGGTAGTGGGCTTCAGCCAGGAGGAGTGGGGGCAGCTGAAGCCTGCCCAGAGGACCCTGTACCGTGATGTAATGCTGGACACCTTCAGGCTTCTGGTCTCTGTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000176293_MULTIEX1-1/4=C1-2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.014 A=0.026 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0135222=KRAB=WD(100=95.3)
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development