HsaINT0186201 @ hg38
Intron Retention
Gene
ENSG00000176293 | ZNF135
Description
zinc finger protein 135 [Source:HGNC Symbol;Acc:HGNC:12919]
Coordinates
chr19:58059269-58060035:+
Coord C1 exon
chr19:58059269-58059310
Coord A exon
chr19:58059311-58059973
Coord C2 exon
chr19:58059974-58060035
Length
663 bp
Sequences
Splice sites
5' ss Seq
AGGGTGAGC
5' ss Score
7.75
3' ss Seq
TCCCCTTTCCCACAGAGCAGGGC
3' ss Score
0.7
Exon sequences
Seq C1 exon
GTCGGCTGCCGGTGCCGCGGCCTTTGTCTCGCAGTCAGGAGG
Seq A exon
GTGAGCTAGGCCGGCGAGGAGGGGGAGGGGAGGCCAGGCCGGGCCGGGCCGGGCCGGGTGCGGGGGGTCCGGGGATCTTCCTGAGGCCCTGGCGGGGCGAGTTTCCAGCAGCGCGCGTCTGTGTGGAGTCCGTTTTGCTGCCCGGGGCCTGGGGAAGGCCGTTTCGGGGCTGGCGGGGGCAGGCTTTGCGGGGCATCCCTAGTCTGAGAGGAGGGCGGGGCCCAACGCCCAGCTGGACAGGAGCTGCTCCGACGGCCCCTGAGGGAACGCGCGCCCCGCCCCTGGCCCCACCTCTGCCCCACACCGGGCACTGGGCCGCCACCTTTGTTGATGGAAGAGAGAAACTGAGGCATAGTGCCCAGGGCCAGGGGACCGCAACCACCCGGCCCTTGTCACTGTAGCGTTAAGGCTCAGAGTCTGCGCAGCAGATATGTGTCCGCACCCGCCAGGCCTTCAGCTTCCCTCAGACAGGCGGGAAAACCCTAGGCTGCCCTTCTCCGAGCGGAGGGCCGCCCCACACACAGCAGGCGCTTAAACGGGTACGCGGGGCCCTGGACGGCTCTCCGCGGAGCTCCCCAGGCTCTGGCGCAGTTCCCCGGCTTGGGGACCTGAGCACCGCCTCTGCCTGCCCCAGCTGCTCACCTCCCCTTTCCCACAGAGCAG
Seq C2 exon
GGCCAGCCGTTCCTGCCAGAAGCCAGGGCATGACCCCTGGGGTGCGCGTCTCCACAGACCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000176293:ENST00000511556:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=0.014 A=NA C2=0.530
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains