BtaINT0164924 @ bosTau6
Intron Retention
Gene
ENSBTAG00000003462 | ZNF135
Description
Bos taurus zinc finger protein 135 (ZNF135), mRNA. [Source:RefSeq mRNA;Acc:NM_001076816]
Coordinates
chr18:65679959-65685209:+
Coord C1 exon
chr18:65679959-65680043
Coord A exon
chr18:65680044-65685082
Coord C2 exon
chr18:65685083-65685209
Length
5039 bp
Sequences
Splice sites
5' ss Seq
CCGGTGAGT
5' ss Score
10.9
3' ss Seq
GCATGTGTGTGATGTTTCAGGAC
3' ss Score
8.51
Exon sequences
Seq C1 exon
AACTGCCTACAGAGGAGCTGACTGTTCCTGCGAAAGGCCCGAGGAGGAGGGAATGACCGCTGGGCTCCTCACTGCCGGGGACCCG
Seq A exon
GTGAGTACAGTGCCACCTCCCACCCGGCCCTCAGGCTCCACCCGTCGTCCCCACCAGGCTCGTTCTGCGTTCAGGGCCTCTGCCCTCACCCTGTCCCCAGCCCGGCCTGTGCTTTCATCAGCTCCACGTCCCTCCACATCTTAGCTTGCCACTCCGAGAAGACCAGCTGGGTCCCACTGCCCCACCCCTGCCCTGTGCCACCCTGGCAGACATCGCTCATCCATCCCACTGACGGGCCTGGAACTTTCTCAACACAGGGCTCAGAGTCTGTTCTCCCAGCTCACACTCCCTCCAGTCACTTGGCCAACGTGTGCTGAGCACTGCTCACGAGCAGGCACTGTTCCAGGTACTGCAGGTGAGGAAACAGACAGGAAATCTCCACCCTGCGGCTCACAGAGCTCATGAGGAATGTAAATGTACCATGTGTTGGGCAGGGAAATAAGCCCCCAAAGAGGGTGGGCTTGGGCATCAGAAGGCCTCCGTGAGGCGTGGCCCCCAGGCAGAGACCTGCAGGAAGGGAGAGGGTGGGGTCAAGCCCACAGGCAGAATGCTGCAGGTGGAGGGGACAACAGGAGCAGAGGCCTGGGGTGGGAACTTAATGTGAAGACCAGGCACACATGTGGCAGGAAGATGGAGAGCCAGGTCTCCTAGGCCAGCTGCAGGGGCCCGAGGCCTTAGGAAGCAGTTCTGGCCATTTTTACCATGTGCAAAGGACTGACACACAGTAGGCACACGGAGAATGGGTGAAGACTGAGTGTTCTGAACACTGGTCAGTGCTGGACATGTTTCACTGGGTTCGACCTCTACATCAGTCCCACGAGGCGGGATGAGGAGGGACCAAGGCACGGGGGCAAGTGACGCAGCTGGGAGCGGTCGAGCTAGGCCTGAGCATTGACGCCTGAGGCCCCAGGGCCCCTCGCACGTCCTGCTCCTTCGTGCCTCTTCCTCCAGGTCCCTCTGGTGCTGCTGCAGCAGCATCCCTCCCGCTTTCCCCAGAACACCGAGCCCTTCTGGAGTTTGCATTTTTGCTCCCTCCCCAACCCAGCAGCTAGCACACAGCAGCAGGAGGCAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGCGCATGTGTGAGAGAGAGAGAGAGAGAGAGCGAGCGAGCGCGCGTGTGTGTGTGTGTGTGTCTTGTCTCCACAGCCTCTGCAGTGTCCAGACCTGTGCTCAGTAGGACTGCAGATAACTGAGCAAGATCTAATGAGTCTTGAAAGTGTGGAGCAAGCAGGAAGGGTTGGTGAGAGAAAAGAAAACCACCCCGCCCTGCCCTCAGCATAATTTGAAGCTGGGTCTGCAGGTAAAGCAACCACTATGTGCCGAGTCCTGGGCACACTTCCTGTGACTTCCCTCATTCCTCCCAATAGCCTTCTCAGGGAGCTTCCAGCAAATTGCAGATGAAGCCAGAGGGGCGGAGTGTAGTGCAAAGATACCTGGGGCTGGGGTTGGAATCTCCACCAAGTGGATGCACCGCCAGTCTTCACATCACCACCCCACCCTCGCCCCACCAGGCCGTTCTGGTGGGAGAATCTCTAGCAGAGGAGGATTCTGCCGGGAGACCAGGGTCCAGGAAGTGGGCGGCCTTGTGTCCCTGGCCACCCCTCCACGTGGCCAAGTCCTTAACTCCACCCTCCACTCTGGCCATCCATAATACTTGCTTCAGTGATGTGAAAATCTTGTTGTGGAGGATGTGAGTGCCCAAACCTCATGCGCCTTGTGGAAAAAAGGCATAAATTCCCCACCTGATAACGGAAGAAACTGGCCTTATTCTCATTTGTGAGTCTGTTGTTGTTTTGTTTGTTCACTGGTTTATTTTTAGACTCCATATGTGAGAGAATGATCAGTATTTATCTTTTTCTGGCTTGTTTCAATAAACATAATACCCTTCAGGTCCATCCGTGTTGTGGCAAATGGCAAAATTTCATTTTTACGGTTGGGCAGCATTCCAGTGAGTGTAGGTGTGCACGTGTGTACCGAGTCTTCTTTACTGGTTCATCTGCTGATGGACACTTGGGTTACTTCCTCATCTAATCTTGGCAATTGTAAATACTGCTGCTGTGAACACGGGGGTGCATATGTCTTTTAGAATTACTGTTGTTTGTTTTCTTCAGATACATACCCGGGAGTAGGATTCCTGGATCATGCAGTACGGGGGTCCTGCCCCTGGATATCCCCACCATTTCATTTTTCTGGCCACTCTCCATTGCTCTTTCTCTCCAAGGTTCCTCTTTGTGTTCAGGCATTGTTTATGCACTGTGTAGATTTTGTGAGTGTGCAGCCTGGTGCCTGCACATATGGACACCAGTGGATGGTCCACCTGAGGCGTGGGGTTCGCAGCCCCTCTGGGGCTCCCTAAGTCGATTCTGCTGTGACATCTCAGGGGTTCTTGTTTGTCCAAGGAGGAACCAGATAGGAGGGTGCAAGTCCCCTGCCTACCCCCCAGGCCCAGAACTCCCATTCCGACCTCTGGAGCCTGCTTTTCTCTCACTTGTCTTTCAGGGAATTGGCTTAGCCCCATGGCCAACAGGCAATCGATGGACCCAGACTTCCTAAGGTCAAATCCTGGCTCCGCCCTCTCTCCGGGTGGTTTTGGGCGACTCCATTGTCGTCCTCCCTGGATGTGATCACCCATGGCTGGGGCTATTAAGTGAGCGATCCATGTGCATCTCTCAGCACCATCTGCATGTTTGCTCTGAATGTTTTTTTTAAGGTTCAGAAATCTAAAGTTCTTGGTGTGTCAGAACTCTGGTGTCTTCCATGGTTGGCTGCTTTTTAAGACCACACAGTCCCATAATGATCTTCTCCTTGCGAAAGTGCCAGGCAGACTTAGAAAGCCCCTTGTTCTCAAGCCTCCTAGGCTTCTGTCCAAAGCTGCCGCTGTTGTCGCTCTCTGCTCCTCACTTTCCGGTGCTAATATACACGTTTCCAGACAAGTAGGAACTAGAACTCTGTTTTGTTTCACATAAATAGCACTGTGCTGGTGATGTCCCCCCCCTCGCCCCGGGATTTTTCCACCTGGAAGGTTATTCCCCAGCTGTGCGTGTCAGTGCCCCCATCTTGTGCATGGCTGCAGGCTTTCCAGACACCAACTTTGGCTGCTCCCACATGACAGGTGTCTAGGCTGTTACCAGTTGTCTGTCACGTATAGACAGTGCAGCAAAGGAGCGAGGTTCTTGGGGGATGGGGAAGTGGAATTGCCAGCATAACTGCTGTATGTATGTTTAAAATCCTGTCCGTTGTGCAAGTAACCCATGCCTGGGTACTCAGCCACCCCTTTCTCAGAAGGGCCGGACTCTCTGTCCTGTTGTTTGCCTTTTGCTACTGATCTGTCAGCTCTTTGCGTGTGCTGGCCAGTCATCCTTTTCCGTCCATTTATGTTGCAAATATTCATTCTGCTGTTATGGTCCTTGTGGCTTGTAAACACTGTCATCTAGAAATCATGAATTGTGATTGCTGAATGTATCATTTTCCTGTTGATTCTGTAACAAATCCCAACAAACTTAGTGGCTTAAAAACACACAAATTTATTGTTTTATACTTCTGGAGACCAGAAGTCTGAAATACGTCTCCTTAGGCTGAAGTCAAGGTGTCCGCAGGGCTGTGTTGCTTCTGGCAGCTCTAGGAGAGAATCTGCTGCCTTCCCTTTTCCAGCTTCTAGATACCTCCTACATTCCTTGGCTCCTGGCCCCTTCCATCTTCTAAGACAGCTTCAGCCATTTGAGTCTTCCTCACATACCATTACTGTGAGGCTGACTCTTCAGCCTCTTCCTCATTGAAAGACCCTTGTGATTACACTGGGCTCACTAGATATTCCAGGATAACCTCCTTATTTTAAGGTCAGCAGACTGCTGCTGCTACTGCTGCTAAATCACTTCAGTCGTGTCTGACTCTGTGCAACCCCACAGACGGCAGCCCACCAGGCTCCCCCATCCCTGGGATTCTCCAGGCAAGAACACCAGAGTGGGTTGCCATTTCCTTCTCCAATGCATGAAAATGAAAAGTGAAAGTGAAGTCGCTCAGTCGTGTCTGACTCTTAGCGACCCCATGGACTGCAGCCCACCAGGCTCCTCCGTCCATGGGATTTTCCAGGCAAGAGTACTGGAGTGGGGTGCCATTGCCGTCTCTGAAGGTCAGCAGACTATCAACCTTAATTCCATCTGCCATCCTAATTCCTCCTTGCTATGTAATCCTGGGATGGTAGAGACACAGTTCTTCCTACCAAACTCATTTTTCTTCTTTCTAACTTCTGTTTTATTTGTGAAGACTTTCTCTGCCACCCATTTATTAAATTAATGGTCTATACTTTTCCAACTTTTTCCTTTTTCAATATTCATCTCTTTAAGATTTCTCGAATTTATTTATGGTATGAGGTAGAGATCTACTGTTTTTCCCCCAAAGGGCTAGTTGCCCCAGTGTTCCCCATTGCTTTGAAATGCTCCCACTACCACACTGACATTCCACTAATGCATGGATCTTCATGTACTTGAATTTAATTTGCACAGTAAACAGATTCTTAATAAAATCTCCCAGATTCAACCCTTGGACTTGCCGCTTACTAGCTTTATACCTTTGGGCAAGATACTTAACGTTCTCCCAGTCTCTGGAAAATGGCTTCTGGCAGCTTGGACCCTCTTATCTCTTAAAGAGGGCTTTGTTTCATTCTGTATACACCACGGACCCCTCAGATGTGATTTTGGCCAAAGGGTGAGGCAGGGAAACAGCCTGACAGTTTTCTAGGTGCTGCTTCCCTGCCTTCTCCCTGAGGGACACCCACGCCAGCACCCTTCCTGTGACCCCAGCATGTCAGGACCAGCGTCCTCTTCACTGTTACTCCTCATTTTTTCATCTCAAGAGTCTCTCCTCCAGCAGGGCTCCTGGCCGCCCAAGGGAAACCTGACCCAAATCCCCTGATCCTCTCAACTACGTGGCTGAGGCCCCTGTTTGCCAGCTGCTCGCTCCCGACAGTCACACTGGGGACTCTGAGGATGCATGTGTGTGATGTTTCAG
Seq C2 exon
GACCAAGTGACTTTTGAGGATGTGGTCGTGGACTTCACCCAGGAGGAGTGGGGGCATCTGGAGCCGGCCCAGAGGACCCTGTACCGAGATGTGATGCTGGAGACCTTCGGGCTCCTGGTCTCTGTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000003462:ENSBTAT00000004502:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.773 A=NA C2=0.023
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0135222=KRAB=WD(100=95.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development