BtaEX0041101 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000003462 | ZNF135
Description
Bos taurus zinc finger protein 135 (ZNF135), mRNA. [Source:RefSeq mRNA;Acc:NM_001076816]
Coordinates
chr18:65679959-65685209:+
Coord C1 exon
chr18:65679959-65680043
Coord A exon
chr18:65680301-65680398
Coord C2 exon
chr18:65685083-65685209
Length
98 bp
Sequences
Splice sites
3' ss Seq
CTGGAACTTTCTCAACACAGGGC
3' ss Score
4.95
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
Exon sequences
Seq C1 exon
AACTGCCTACAGAGGAGCTGACTGTTCCTGCGAAAGGCCCGAGGAGGAGGGAATGACCGCTGGGCTCCTCACTGCCGGGGACCCG
Seq A exon
GGCTCAGAGTCTGTTCTCCCAGCTCACACTCCCTCCAGTCACTTGGCCAACGTGTGCTGAGCACTGCTCACGAGCAGGCACTGTTCCAGGTACTGCAG
Seq C2 exon
GACCAAGTGACTTTTGAGGATGTGGTCGTGGACTTCACCCAGGAGGAGTGGGGGCATCTGGAGCCGGCCCAGAGGACCCTGTACCGAGATGTGATGCTGGAGACCTTCGGGCTCCTGGTCTCTGTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000003462_MULTIEX1-2/4=1-3
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.773 A=0.737 C2=0.023
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0135222=KRAB=WD(100=95.3)
Main Inclusion Isoform:
ENSBTAT00000004502fB7964
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCTGACTGTTCCTGCGAAAG
R:
TCTCCAGCATCACATCTCGGT
Band lengths:
173-271
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development