BtaEX0041102 @ bosTau6

Exon Skipping

Gene

ENSBTAG00000003462 | ZNF135

Description

Bos taurus zinc finger protein 135 (ZNF135), mRNA. [Source:RefSeq mRNA;Acc:NM_001076816]

Coordinates

chr18:65679959-65689192:+

Coord C1 exon

chr18:65679959-65680043

Coord A exon

chr18:65685083-65685209

Coord C2 exon

chr18:65686792-65689192

Length

127 bp

Sequences

Splice sites

3' ss Seq

GCATGTGTGTGATGTTTCAGGAC

3' ss Score

8.51

5' ss Seq

TGGGTGAGG

5' ss Score

6.74

Exon sequences

Seq C1 exon

AACTGCCTACAGAGGAGCTGACTGTTCCTGCGAAAGGCCCGAGGAGGAGGGAATGACCGCTGGGCTCCTCACTGCCGGGGACCCG

Seq A exon

GACCAAGTGACTTTTGAGGATGTGGTCGTGGACTTCACCCAGGAGGAGTGGGGGCATCTGGAGCCGGCCCAGAGGACCCTGTACCGAGATGTGATGCTGGAGACCTTCGGGCTCCTGGTCTCTGTGG

Seq C2 exon

ATTTGGAAACCAGACCCCAAAGCAAGCTATCAACTGAAAATCAAGGTGTAACTGAAGAAATACCCAACAGTGCCCTGGTAGAAAGGTTCCTACAGGAAAGTCTGTGGCACTCTAAGGATGAAGGTGCTGCAGGCCACAGGGAACAGGGCCCTGAGAAGTCAGATAGCTGTGTGGTACAGGCAGCCTGCACACTTGTAAAGACACTGACAGAGGAGCAGCAGCAAGGGGATGGGTGTGGGGAAAACTTGAGTTTGAGGCCAGATCTCCCAACTCAACCAATGACTCCTGAAAGGCAGGGTGCCCCAACGTGGGGGACACATGGACAAAGGGAGAATCCAGACTCAAATGCTCAACAGAAAACCTGTGCAAAAGAGAAGCCCTATGGATGTCAGGAATGTGGAAAGGCCTTTAGTCACAGCTTAGCACTCATTGAACACCACCGAACACACACAGGAGAGAGGCCTTATGAATGTCCTGAATGTGGAAAAGGCTTTCGAAAC

VastDB Features

Vast-tools module Information

Secondary ID

ENSBTAG00000003462_MULTIEX1-3/4=1-C2

Average complexity

C3

Mappability confidence:

100%=100=100%

Protein Impact

ORF disruption upon sequence exclusion

No structure available

Features

Disorder rate (Iupred):

C1=0.773 A=0.023 C2=0.304

Domain overlap (PFAM):

C1:

NO

A:

PF0135222=KRAB=WD(100=95.3)

C2:

PF134651=zf-H2C2_2=WD(100=4.5),PF134651=zf-H2C2_2=WD(100=4.5),PF134651=zf-H2C2_2=WD(100=4.2),PF134651=zf-H2C2_2=WD(100=4.5),PF134651=zf-H2C2_2=WD(100=4.5),PF134651=zf-H2C2_2=WD(100=4.5),PF134651=zf-H2C2_2=WD(100=4.4),PF134651=zf-H2C2_2=WD(100=4.5),PF134651=zf-H2C2_2=WD(100=4.5),PF134651=zf-H2C2_2=WD(100=4.5),PF134651=zf-H2C2_2=WD(100=4.5),PF134651=zf-H2C2_2=WD(100=4.4),PF134651=zf-H2C2_2=WD(100=4.5),PF134651=zf-H2C2_2=WD(100=4.5),PF134651=zf-H2C2_2=WD(100=4.5)

Main Inclusion Isoform:

ENSBTAP00000004502