BtaINT0164926 @ bosTau6
Intron Retention
Gene
ENSBTAG00000003462 | ZNF135
Description
Bos taurus zinc finger protein 135 (ZNF135), mRNA. [Source:RefSeq mRNA;Acc:NM_001076816]
Coordinates
chr18:65685925-65689192:+
Coord C1 exon
chr18:65685925-65686020
Coord A exon
chr18:65686021-65686791
Coord C2 exon
chr18:65686792-65689192
Length
771 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
3' ss Seq
CATTTCTCTGCTTCTTACAGATT
3' ss Score
9.8
Exon sequences
Seq C1 exon
GACACTGGCTCCCAAAGCCGGATGTCATCTCCTTGCTGGAGCAGGAGGCAGAGCTGTGGGCAGCGGACAAGGGAGGCCCCCGAGGTGTGTGCCCAG
Seq A exon
GTGAGATGAAAGCCCTGCAGTCTGGGGGGAGCCTGTTCACCCCCCAGCTTCTCTCTCCATACCCACCCTTGGTTCTTCAGAGCAAATTGACAACTCAGTCTCTCAGGGAACATTCACCAAGCACCTGTTCTGCTGTGAGAAGGGTAACCTCAAATTCAAAGTCTCCAGGGATGAGGACGTGGATATGTTTGGGAGTCTCTGTTCTGCCAACCACATCTTGCTTGAGCTTTTCTATATAACTTTTCACTGGAGTGTAACAAATGGGAAAGGTGCCCACATCATACTTTTAAGCAAGTCTGGTGTCAGGGTGGGGATGTCAGGCACTGAGGTCATGGCTGTACAGAGACAGTCAGATCTCAGGGCCAGAAGGGAGGAGGAGGAAATGCATTTGTTTCCTCCTTCAACACATCCATTGAGCTGTGCTCTGGGCCAGGGGTACTCCAGGCCCAGGACATCTGTTGATAGTTTCCCTGGATGAGTGCTTTCTCCTCAGCATCCTCTCCTGCCCTCATTCTCTGTACTCCCCTGAACACCCCATCCACACCCCCTAAACCAGTGCCCCACCCATGATTATTCTCAGTGTGTCCTTCCCTGACTTGTAAAAATGTACTTTTTAATGGACAAAGCTGCCTATGCCCTGGACCTTTCAGAACTATGAGTTTTATTCTTCTGTCCACTCACCATCCCCCCCCCCCCCCTCCCCGCAACACACACACAGACTTCCTTCAGAACCAGGATTAGGGGACATTTCCATTTCTCTGCTTCTTACAG
Seq C2 exon
ATTTGGAAACCAGACCCCAAAGCAAGCTATCAACTGAAAATCAAGGTGTAACTGAAGAAATACCCAACAGTGCCCTGGTAGAAAGGTTCCTACAGGAAAGTCTGTGGCACTCTAAGGATGAAGGTGCTGCAGGCCACAGGGAACAGGGCCCTGAGAAGTCAGATAGCTGTGTGGTACAGGCAGCCTGCACACTTGTAAAGACACTGACAGAGGAGCAGCAGCAAGGGGATGGGTGTGGGGAAAACTTGAGTTTGAGGCCAGATCTCCCAACTCAACCAATGACTCCTGAAAGGCAGGGTGCCCCAACGTGGGGGACACATGGACAAAGGGAGAATCCAGACTCAAATGCTCAACAGAAAACCTGTGCAAAAGAGAAGCCCTATGGATGTCAGGAATGTGGAAAGGCCTTTAGTCACAGCTTAGCACTCATTGAACACCACCGAACACACACAGGAGAGAGGCCTTATGAATGTCCTGAATGTGGAAAAGGCTTTCGAAACAGCTCGGCACTTACCAAACACCAGCGGATCCACACTGGTGAGAAGCCTTACAAGTGTGCTCAGTGTGGGAGGACCTTCAACCAAATTGCCCCACTGATCCAGCACCAGAGGACTCACACAGGTGAGAAACCCTATGAGTGCAGTGAGTGTGGGAAATCCTTCAGCTTTAGATCGTCCTTCAGCCAACACGAGCGGACGCACACAGGTGAGAAGCCCTACACGTGCAGTCAGTGTGGGAAGGCCTTCCGACAGAGCATCCATCTCACCCAGCACCTGCGAATCCACACCGGGGAGAAGCCGTACCAGTGTGGAGAGTGTGGCAAGGCCTTCAGCCACAGTTCATCCCTGACGAAACACCAGCGGATCCACACTGGGGAGAAGCCCTACGAGTGCCAGGCATGTGGAAAAGCCTTCACCCAGATCACACCACTGATTCAGCATCAGAGGATACACACGGGCGAGCGGCCTTATGAGTGCAGTGAGTGCGGGAGGGCTTTCAGCCAGAGCACACTCCTGACTGAGCATCGGAGGATCCACACAGGAGAGAAGCCCTACGGGTGCAACGAGTGTGGGAAAGCCTTCAGTCACAGCTCATCGCTTAGCCAGCACGAGCGGACGCACACAGGCGAGAAACCCTATGCGTGCAGTCAGTGTGGGAAGGCCTTCCGGCAGAGCACACACCTCACTCAGCATCAGAGAACCCACACGGGGGAGAAGCCCTACGAGTGTAGTGACTGCGGCAAGGCCTTCAGCCACAGCTCATCCCTGACCAAACACCAGCGGATCCACACTGGGGAGAAGCCCTATGAGTGTAACGAGTGTGGCAAAGCCTTCAGCCAGCTTGCTCCACTCATTCAACACCAGCGGATCCACACGGGAGAGAAGCCCTATGAGTGTAATCAGTGTGGCAGAGCCTTCAGCCAGAGCTCCCTCCTCATAGAACACCAGAGGATTCACACCAAGGAAAAACCCTATGGGTGCAACGAGTGTGGAAAGTCCTTCAGCCACAGCTCATCACTCAGCCAACACGAGAGGACGCACACTGGGGAAAAGCCCTACGACTGCCAGGACTGTGGGAAGTCCTTCAGGCAGCGCACCCACCTCACTCAGCACCAGAGGATCCACACAGGAGAGAAGCCATATGAGTGCAGGGACTGTGGGAAGGCCTTCACACACAGCTCCTCCTTTATCAAACACCAGAGAACTCATACTGGGTAGGCCCACTCTGGTGTGTGTGCTGGGACCCAGCAACGCCTTAAGCCATAGCACATCACTTACTCCATTTGACCCAGTCATACTCCTGATAAACAGTACACTGTAAACAAGCCTTTGTGCTCAACACACCCTAAGACTCCCACACAGAGTTGACATTTACAGAAATGATTGTGGGAACAGCAAGCTCTGGGTCATCCATCCCAGATAGCCAGTCATCCAGACAGTAGGGAAGTGTGAAGTTAATCACTGTTGAGAACCTCCAGCCATGAGTGCCCACCAATGCTTCACTATAGAACCTACAAAAGGGAGAAATGGAAAAAATGTAATGGACATGGGGTGGCTTCTAAGAAGTCACCATATTCTAAACCAGACATTTTCAAAGTGGTGAGAAACTCAGCAAATGCCTTTCATATAAAAGAATCAGATGCAGTCAGAACTTGTCATTATTGCACATGACATTCTTCAGGTGCTTATGAAAAGTGCAAGTTGACTTTCATATTTGCTAAAACCAATATGGCAGAATGTTCCAGACATGACAGTGGCATTTTTATGGAATCATGAATATTCAAATATCTCAGCACAAAATTTTCTGATTGGTGTGTAATTGTTTGAACAAGGTACATGGCCACCAGCCTCACAAATGTGAATGCCATATGATAATTATCCATGTACTATAAACAGATTTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000003462:ENSBTAT00000004502:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.333 A=NA C2=0.304
Domain overlap (PFAM):
C1:
PF0135222=KRAB=PD(0.1=0.0)
A:
NA
C2:
PF134651=zf-H2C2_2=WD(100=4.5),PF134651=zf-H2C2_2=WD(100=4.5),PF134651=zf-H2C2_2=WD(100=4.2),PF134651=zf-H2C2_2=WD(100=4.5),PF134651=zf-H2C2_2=WD(100=4.5),PF134651=zf-H2C2_2=WD(100=4.5),PF134651=zf-H2C2_2=WD(100=4.4),PF134651=zf-H2C2_2=WD(100=4.5),PF134651=zf-H2C2_2=WD(100=4.5),PF134651=zf-H2C2_2=WD(100=4.5),PF134651=zf-H2C2_2=WD(100=4.5),PF134651=zf-H2C2_2=WD(100=4.4),PF134651=zf-H2C2_2=WD(100=4.5),PF134651=zf-H2C2_2=WD(100=4.5),PF134651=zf-H2C2_2=WD(100=4.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAAAGCCGGATGTCATCTCC
R:
TGGGAGATCTGGCCTCAAACT
Band lengths:
354-1125
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development