BtaALTD0024694-1/2 @ bosTau6
Alternative 5'ss
Gene
ENSBTAG00000003462 | ZNF135
Description
Bos taurus zinc finger protein 135 (ZNF135), mRNA. [Source:RefSeq mRNA;Acc:NM_001076816]
Coordinates
chr18:65685925-65689192:+
Coord C1 exon
chr18:65685925-65686008
Coord A exon
NA
Coord C2 exon
chr18:65686792-65689192
Length
0 bp
Sequences
Splice sites
5' ss Seq
GAGGTGTGT
5' ss Score
6.14
3' ss Seq
CATTTCTCTGCTTCTTACAGATT
3' ss Score
9.8
Exon sequences
Seq C1 exon
GACACTGGCTCCCAAAGCCGGATGTCATCTCCTTGCTGGAGCAGGAGGCAGAGCTGTGGGCAGCGGACAAGGGAGGCCCCCGAG
Seq A exon
NA
Seq C2 exon
ATTTGGAAACCAGACCCCAAAGCAAGCTATCAACTGAAAATCAAGGTGTAACTGAAGAAATACCCAACAGTGCCCTGGTAGAAAGGTTCCTACAGGAAAGTCTGTGGCACTCTAAGGATGAAGGTGCTGCAGGCCACAGGGAACAGGGCCCTGAGAAGTCAGATAGCTGTGTGGTACAGGCAGCCTGCACACTTGTAAAGACACTGACAGAGGAGCAGCAGCAAGGGGATGGGTGTGGGGAAAACTTGAGTTTGAGGCCAGATCTCCCAACTCAACCAATGACTCCTGAAAGGCAGGGTGCCCCAACGTGGGGGACACATGGACAAAGGGAGAATCCAGACTCAAATGCTCAACAGAAAACCTGTGCAAAAGAGAAGCCCTATGGATGTCAGGAATGTGGAAAGGCCTTTAGTCACAGCTTAGCACTCATTGAACACCACCGAACACACACAGGAGAGAGGCCTTATGAATGTCCTGAATGTGGAAAAGGCTTTCGAAAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000003462-8-6,9-6-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.333 A=NA C2=0.304
Domain overlap (PFAM):
C1:
PF0135222=KRAB=PD(0.1=0.0)
A:
NA
C2:
PF134651=zf-H2C2_2=WD(100=4.5),PF134651=zf-H2C2_2=WD(100=4.5),PF134651=zf-H2C2_2=WD(100=4.2),PF134651=zf-H2C2_2=WD(100=4.5),PF134651=zf-H2C2_2=WD(100=4.5),PF134651=zf-H2C2_2=WD(100=4.5),PF134651=zf-H2C2_2=WD(100=4.4),PF134651=zf-H2C2_2=WD(100=4.5),PF134651=zf-H2C2_2=WD(100=4.5),PF134651=zf-H2C2_2=WD(100=4.5),PF134651=zf-H2C2_2=WD(100=4.5),PF134651=zf-H2C2_2=WD(100=4.4),PF134651=zf-H2C2_2=WD(100=4.5),PF134651=zf-H2C2_2=WD(100=4.5),PF134651=zf-H2C2_2=WD(100=4.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAAAGCCGGATGTCATCTCC
R:
GCTTTGGGGTCTGGTTTCCAA
Band lengths:
96-108
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development