BtaEX0041103 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000003462 | ZNF135
Description
Bos taurus zinc finger protein 135 (ZNF135), mRNA. [Source:RefSeq mRNA;Acc:NM_001076816]
Coordinates
chr18:65685083-65689192:+
Coord C1 exon
chr18:65685083-65685209
Coord A exon
chr18:65685925-65686020
Coord C2 exon
chr18:65686792-65689192
Length
96 bp
Sequences
Splice sites
3' ss Seq
GTGGGTCTCCCTCTGAGCAGGAC
3' ss Score
6.46
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
Exon sequences
Seq C1 exon
GACCAAGTGACTTTTGAGGATGTGGTCGTGGACTTCACCCAGGAGGAGTGGGGGCATCTGGAGCCGGCCCAGAGGACCCTGTACCGAGATGTGATGCTGGAGACCTTCGGGCTCCTGGTCTCTGTGG
Seq A exon
GACACTGGCTCCCAAAGCCGGATGTCATCTCCTTGCTGGAGCAGGAGGCAGAGCTGTGGGCAGCGGACAAGGGAGGCCCCCGAGGTGTGTGCCCAG
Seq C2 exon
ATTTGGAAACCAGACCCCAAAGCAAGCTATCAACTGAAAATCAAGGTGTAACTGAAGAAATACCCAACAGTGCCCTGGTAGAAAGGTTCCTACAGGAAAGTCTGTGGCACTCTAAGGATGAAGGTGCTGCAGGCCACAGGGAACAGGGCCCTGAGAAGTCAGATAGCTGTGTGGTACAGGCAGCCTGCACACTTGTAAAGACACTGACAGAGGAGCAGCAGCAAGGGGATGGGTGTGGGGAAAACTTGAGTTTGAGGCCAGATCTCCCAACTCAACCAATGACTCCTGAAAGGCAGGGTGCCCCAACGTGGGGGACACATGGACAAAGGGAGAATCCAGACTCAAATGCTCAACAGAAAACCTGTGCAAAAGAGAAGCCCTATGGATGTCAGGAATGTGGAAAGGCCTTTAGTCACAGCTTAGCACTCATTGAACACCACCGAACACACACAGGAGAGAGGCCTTATGAATGTCCTGAATGTGGAAAAGGCTTTCGAAAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000003462_MULTIEX1-4/4=3-C2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.023 A=0.333 C2=0.304
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=95.3)
A:
PF0135222=KRAB=PD(0.1=0.0)
C2:
PF134651=zf-H2C2_2=WD(100=4.5),PF134651=zf-H2C2_2=WD(100=4.5),PF134651=zf-H2C2_2=WD(100=4.2),PF134651=zf-H2C2_2=WD(100=4.5),PF134651=zf-H2C2_2=WD(100=4.5),PF134651=zf-H2C2_2=WD(100=4.5),PF134651=zf-H2C2_2=WD(100=4.4),PF134651=zf-H2C2_2=WD(100=4.5),PF134651=zf-H2C2_2=WD(100=4.5),PF134651=zf-H2C2_2=WD(100=4.5),PF134651=zf-H2C2_2=WD(100=4.5),PF134651=zf-H2C2_2=WD(100=4.4),PF134651=zf-H2C2_2=WD(100=4.5),PF134651=zf-H2C2_2=WD(100=4.5),PF134651=zf-H2C2_2=WD(100=4.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACTTCACCCAGGAGGAGTGG
R:
TACCAGGGCACTGTTGGGTAT
Band lengths:
177-273
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development