BtaINT0164925 @ bosTau6
Intron Retention
Gene
ENSBTAG00000003462 | ZNF135
Description
Bos taurus zinc finger protein 135 (ZNF135), mRNA. [Source:RefSeq mRNA;Acc:NM_001076816]
Coordinates
chr18:65685083-65686020:+
Coord C1 exon
chr18:65685083-65685209
Coord A exon
chr18:65685210-65685924
Coord C2 exon
chr18:65685925-65686020
Length
715 bp
Sequences
Splice sites
5' ss Seq
TGGGTGAGG
5' ss Score
6.74
3' ss Seq
GTGGGTCTCCCTCTGAGCAGGAC
3' ss Score
6.46
Exon sequences
Seq C1 exon
GACCAAGTGACTTTTGAGGATGTGGTCGTGGACTTCACCCAGGAGGAGTGGGGGCATCTGGAGCCGGCCCAGAGGACCCTGTACCGAGATGTGATGCTGGAGACCTTCGGGCTCCTGGTCTCTGTGG
Seq A exon
GTGAGGCCACCCCCATGCCCTGACGATCTGCCCCCAGCACAGGTTCTCATTTTCCTGGGATAAAAGTGGGCGTACATCTAGGCCTTAAATGGAGATATCTGGGCTGTGTCTTAGGCTTCAGGGACCCGACTGTTTTAGTGTAGGTAACATCAGTTATAGCGTTTTGGTTGCAAATACAGATCCGAGTGAACAGCACCAGAAGCAGAAGGTGCTGGGGTAAGAGGGACATATCGGTCCTGTGACTGCGGAACCCCAGGGCAGACTTGGATCTGCCTTTGGTGCTGTGGGGAACCCCCTCCTCCCCCCATGCCTCTTTCATCCTCCGTTCACAGATGGGCCCCCTGAAGGTGATGAGACCGCTAACAGTGTGCCTCTCCTGGGCTTGAGACCAGCAGGAGAGACAGGGTCTGTGTCCCGGGCGCCCATAGAAGGCCCCTAGGTTGTCTTGGTTTGGCAGCCAGGTCCCCTCCATGCTGGTCATTGTTGCCACGAGGCAAAGGAAGAAGCAGAGCTCTGATTGGCTACCCTGGGGCTAGGGATGGGGTCAGGGACTGAGTGGGGGGAAGGGGCCTCTAAGGAAGGGCAGAAGCTGTTACAACAACCGTGTCCTCCCAGAACCCCAGACACGTGGTCCTGGAAGACTGAAGGTGTGGGCAGAGGGTTAGGGAGGCTCCTAGGACACAGATGTTCACTGCGTGGGTCTCCCTCTGAGCAG
Seq C2 exon
GACACTGGCTCCCAAAGCCGGATGTCATCTCCTTGCTGGAGCAGGAGGCAGAGCTGTGGGCAGCGGACAAGGGAGGCCCCCGAGGTGTGTGCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000003462:ENSBTAT00000004502:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.023 A=NA C2=0.333
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=95.3)
A:
NA
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCAAGTGACTTTTGAGGATGTGG
R:
CTGGGCACACACCTCGGG
Band lengths:
222-937
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development