HsaINT0186202 @ hg38
Intron Retention
Gene
ENSG00000176293 | ZNF135
Description
zinc finger protein 135 [Source:HGNC Symbol;Acc:HGNC:12919]
Coordinates
chr19:58061580-58063541:+
Coord C1 exon
chr19:58061580-58061706
Coord A exon
chr19:58061707-58063445
Coord C2 exon
chr19:58063446-58063541
Length
1739 bp
Sequences
Splice sites
5' ss Seq
TGGGTAAGG
5' ss Score
9.08
3' ss Seq
ATGGGTCTCTCCCTGAGCAGGAC
3' ss Score
7.13
Exon sequences
Seq C1 exon
GAGCAAGTGACGTTTGAGGACGTGGTAGTGGGCTTCAGCCAGGAGGAGTGGGGGCAGCTGAAGCCTGCCCAGAGGACCCTGTACCGTGATGTAATGCTGGACACCTTCAGGCTTCTGGTCTCTGTGG
Seq A exon
GTAAGGCCACACCCATGTCCTATCTGTTGATCTGTCCCTGACACGGATTCTGATTCTACCAGGTTAAATATTTATAGGACTGAGCTTTAAAAGCAAATGCCTGGGGCTGTATGTCTTGGGCTTTAAGAACCTGACTGTTTTAATGTAGGAAATATCAATTAAGACCAATATTAGCAAGTCTCAGACTCAACCTGAAATCAACAGAAGCAGAGAAACATGAGGTGAGGGAAACATACTGGGTCTGAAGACTACAGAATCCCAGGGTAGACCAGGGTGTTCTGTAGAGCTGTTAGGAGCCCCTCCTTCTTCAACACCTCCCTCTGCACTTCTGTCTTAGTCTGTTAGGGCTGCTAAAATACCTTAGACTGGGTAATTTTAAACAATAGATATTTGTTGCTCATGGTTCTGGAGGCTGGGAAGCCTAAGATCAAGGTGTCAGCAAATTCAGTGTTTGGTGAGGGCTTGCTCCTCACTGATGGCACTTTCTTCCTGTGTCCTGACATGCCATAAGGGCAAGGGAGTTATCTCAAGCTTCTTTTATAAGGGCACTGATCCCATTCATGAGTGGAGCCCTCATGAATTAATCACTTCCCCAAGGCCCCACCTCAACACTATCAGATTAGGTATTACATTCTAACATTTGAACCTTATTTATTTATTTATTTATTTATTTGTTTTTAAATTTTTTATTTTTGAGACAGAGTCTCGCTGTGTCACCCGGGCTGGAGTGCAGTGGTGCGATCTCGGCTCACTGCAAGCTCTGCCTCCCGGGTTCACACCATTCTCCTGCCTCATCTTCCTGAGTAGCTGGGACTACAGGTGCCCACCACCACGCCTGGCTAATTTTTTTTTTTTTTTGTATATTTAGTAGAGACGGGGTTTCACCGTGTTAGCCAGGATGGTCTCGATCTCCTGACCTCGTGATGCACCCACCTTAGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACTGCGTCCGGCCTGAACCTTTTTTATTTTTAAGAAACAGGGTCTTGTTCTCTTGCCCAGGGTGGAGTGCTGTGGCACAGTCATACTTACTGCACACTTAACCTCCTGGCTCAAGTAAACCTTCCATTTCAGTCTTCCAAGTAGCTGGGACTACAGGTGCATACCACCACACCTAGCTAATTTTTAAAATTTTTGTAGAGACGGGTCCTTGCTGTGTTGCCCAGGCTGCCCTCAAGCTTCTAGGCTAAAGTGATCCTCCCACCTCAGCCTCCCAAAGTGCTGGAATTACAGGCATAAGCCACTATGCATAGCCTGAATTTTAGGGGGACACCAACATTCAGACCATAGCAATCTCTTTCTGGCTTCATTTCCAGAGAGGCTCCTCTGGAGGTGACAAGACAACTGCCTGGGGTGCCTTTCCTGCAACCAAGACCAGCAGAAAAGACAGGATCTGTGTCCCAGGGTTGTCCTGGTTTGGCTGCCAGGTCTTCTTCACAGTGATCATTGATGCCAGTGGGCAGGGGAGGAACCAGAGTTCTGATTGTCCAGGCTTGGGTCACATGTCCACCCCAGAACCAGTGGTAGGGTCAGGGACTGAGAGTAGGGGAATGAGTCCCTGAGGAACATCCAGGGCTGTGGGTATGACAGCTGAAGTCACTCAGGGGTCCCCAGCCATCTGGGACCTGGAAGACCAAAGGTGGAATGGGCTGAGGCTCAGGAAGGGTCCTGGGATACAAATGCTCACTCTATGGGTCTCTCCCTGAGCAG
Seq C2 exon
GACATTGGTTACCGAAGCCGAATGTCATCTCCCTGCTGGAGCAAGAGGCAGAGCTGTGGGCGGTGGAGTCTAGACTTCCCCAAGGCGTGTACCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000176293:ENST00000511556:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=95.3)
A:
NA
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGCAAGTGACGTTTGAGGAC
R:
CTGGGTACACGCCTTGGGG
Band lengths:
223-1962
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains