HsaINT0186202 @ hg19
Intron Retention
Gene
ENSG00000176293 | ZNF135
Description
zinc finger protein 135 [Source:HGNC Symbol;Acc:12919]
Coordinates
chr19:58572948-58574909:+
Coord C1 exon
chr19:58572948-58573074
Coord A exon
chr19:58573075-58574813
Coord C2 exon
chr19:58574814-58574909
Length
1739 bp
Sequences
Splice sites
5' ss Seq
TGGGTAAGG
5' ss Score
9.08
3' ss Seq
ATGGGTCTCTCCCTGAGCAGGAC
3' ss Score
7.13
Exon sequences
Seq C1 exon
GAGCAAGTGACGTTTGAGGACGTGGTAGTGGGCTTCAGCCAGGAGGAGTGGGGGCAGCTGAAGCCTGCCCAGAGGACCCTGTACCGTGATGTAATGCTGGACACCTTCAGGCTTCTGGTCTCTGTGG
Seq A exon
GTAAGGCCACACCCATGTCCTATCTGTTGATCTGTCCCTGACACGGATTCTGATTCTACCAGGTTAAATATTTATAGGACTGAGCTTTAAAAGCAAATGCCTGGGGCTGTATGTCTTGGGCTTTAAGAACCTGACTGTTTTAATGTAGGAAATATCAATTAAGACCAATATTAGCAAGTCTCAGACTCAACCTGAAATCAACAGAAGCAGAGAAACATGAGGTGAGGGAAACATACTGGGTCTGAAGACTACAGAATCCCAGGGTAGACCAGGGTGTTCTGTAGAGCTGTTAGGAGCCCCTCCTTCTTCAACACCTCCCTCTGCACTTCTGTCTTAGTCTGTTAGGGCTGCTAAAATACCTTAGACTGGGTAATTTTAAACAATAGATATTTGTTGCTCATGGTTCTGGAGGCTGGGAAGCCTAAGATCAAGGTGTCAGCAAATTCAGTGTTTGGTGAGGGCTTGCTCCTCACTGATGGCACTTTCTTCCTGTGTCCTGACATGCCATAAGGGCAAGGGAGTTATCTCAAGCTTCTTTTATAAGGGCACTGATCCCATTCATGAGTGGAGCCCTCATGAATTAATCACTTCCCCAAGGCCCCACCTCAACACTATCAGATTAGGTATTACATTCTAACATTTGAACCTTATTTATTTATTTATTTATTTATTTGTTTTTAAATTTTTTATTTTTGAGACAGAGTCTCGCTGTGTCACCCGGGCTGGAGTGCAGTGGTGCGATCTCGGCTCACTGCAAGCTCTGCCTCCCGGGTTCACACCATTCTCCTGCCTCATCTTCCTGAGTAGCTGGGACTACAGGTGCCCACCACCACGCCTGGCTAATTTTTTTTTTTTTTTGTATATTTAGTAGAGACGGGGTTTCACCGTGTTAGCCAGGATGGTCTCGATCTCCTGACCTCGTGATGCACCCACCTTAGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACTGCGTCCGGCCTGAACCTTTTTTATTTTTAAGAAACAGGGTCTTGTTCTCTTGCCCAGGGTGGAGTGCTGTGGCACAGTCATACTTACTGCACACTTAACCTCCTGGCTCAAGTAAACCTTCCATTTCAGTCTTCCAAGTAGCTGGGACTACAGGTGCATACCACCACACCTAGCTAATTTTTAAAATTTTTGTAGAGACGGGTCCTTGCTGTGTTGCCCAGGCTGCCCTCAAGCTTCTAGGCTAAAGTGATCCTCCCACCTCAGCCTCCCAAAGTGCTGGAATTACAGGCATAAGCCACTATGCATAGCCTGAATTTTAGGGGGACACCAACATTCAGACCATAGCAATCTCTTTCTGGCTTCATTTCCAGAGAGGCTCCTCTGGAGGTGACAAGACAACTGCCTGGGGTGCCTTTCCTGCAACCAAGACCAGCAGAAAAGACAGGATCTGTGTCCCAGGGTTGTCCTGGTTTGGCTGCCAGGTCTTCTTCACAGTGATCATTGATGCCAGTGGGCAGGGGAGGAACCAGAGTTCTGATTGTCCAGGCTTGGGTCACATGTCCACCCCAGAACCAGTGGTAGGGTCAGGGACTGAGAGTAGGGGAATGAGTCCCTGAGGAACATCCAGGGCTGTGGGTATGACAGCTGAAGTCACTCAGGGGTCCCCAGCCATCTGGGACCTGGAAGACCAAAGGTGGAATGGGCTGAGGCTCAGGAAGGGTCCTGGGATACAAATGCTCACTCTATGGGTCTCTCCCTGAGCAG
Seq C2 exon
GACATTGGTTACCGAAGCCGAATGTCATCTCCCTGCTGGAGCAAGAGGCAGAGCTGTGGGCGGTGGAGTCTAGACTTCCCCAAGGCGTGTACCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000176293-ZNF135:NM_001164529:2
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.021 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0135222=KRAB=PU(95.1=90.7)
A:
NA
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGCAAGTGACGTTTGAGGAC
R:
CTGGGTACACGCCTTGGGG
Band lengths:
223-1962
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)