HsaEX0073037 @ hg19
Exon Skipping
Gene
ENSG00000176293 | ZNF135
Description
zinc finger protein 135 [Source:HGNC Symbol;Acc:12919]
Coordinates
chr19:58572948-58593375:+
Coord C1 exon
chr19:58572948-58573074
Coord A exon
chr19:58574814-58574909
Coord C2 exon
chr19:58593060-58593375
Length
96 bp
Sequences
Splice sites
3' ss Seq
ATGGGTCTCTCCCTGAGCAGGAC
3' ss Score
7.13
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
Exon sequences
Seq C1 exon
GAGCAAGTGACGTTTGAGGACGTGGTAGTGGGCTTCAGCCAGGAGGAGTGGGGGCAGCTGAAGCCTGCCCAGAGGACCCTGTACCGTGATGTAATGCTGGACACCTTCAGGCTTCTGGTCTCTGTGG
Seq A exon
GACATTGGTTACCGAAGCCGAATGTCATCTCCCTGCTGGAGCAAGAGGCAGAGCTGTGGGCGGTGGAGTCTAGACTTCCCCAAGGCGTGTACCCAG
Seq C2 exon
GGTCTTGCTCTGTCACCCAGGCTGGAGTGCAGTGGCTCAATCTCAGCTCACTGCAACCTTGACCTCCCAGTTTCAAGCCATCCTCCCACCTCAGCCTCCCAAGTAGCTGGGACTACGGGTGTGCACCACCGTGCCCAGCTTCAGCCTCACAAGTGCTGAGATTACAGGTGTAAGCCTCTGCATCTGGCCCAGTTAGCCATACAGTGGAAAAACTGCACTCTAACCAGGTGAGCAAAGAGAACATCACTGACAGGAGGAATGTGGACACCGTGCACCCTGGATGGGATGGGGGAAGGCGCACACATGCAGGCCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000176293_MULTIEX1-3/5=2-5
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.021 A=0.000 C2=NA
Domain overlap (PFAM):
C1:
PF0135222=KRAB=PU(95.1=90.7)
A:
PF0135222=KRAB=PD(0.1=0.0)
C2:
PF0135222=KRAB=PD(0.1=0.0),PF139001=GVQW=WD(100=76.2)
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAGGACCCTGTACCGTGATG
R:
CGTAGTCCCAGCTACTTGGGA
Band lengths:
174-270
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)