HsaEX0073036 @ hg19
Exon Skipping
Gene
ENSG00000176293 | ZNF135
Description
zinc finger protein 135 [Source:HGNC Symbol;Acc:12919]
Coordinates
chr19:58570607-58574909:+
Coord C1 exon
chr19:58570607-58570678
Coord A exon
chr19:58572948-58573074
Coord C2 exon
chr19:58574814-58574909
Length
127 bp
Sequences
Splice sites
3' ss Seq
ACACTCGTGTGATGTTTCAGGAG
3' ss Score
7.89
5' ss Seq
TGGGTAAGG
5' ss Score
9.08
Exon sequences
Seq C1 exon
GAAATGGAGTTAGGCTCGCGCCGGCGCAGTGTCGGCTGCCGGTGCCGCGGCCTTTGTCTCGCAGTCAGGAGG
Seq A exon
GAGCAAGTGACGTTTGAGGACGTGGTAGTGGGCTTCAGCCAGGAGGAGTGGGGGCAGCTGAAGCCTGCCCAGAGGACCCTGTACCGTGATGTAATGCTGGACACCTTCAGGCTTCTGGTCTCTGTGG
Seq C2 exon
GACATTGGTTACCGAAGCCGAATGTCATCTCCCTGCTGGAGCAAGAGGCAGAGCTGTGGGCGGTGGAGTCTAGACTTCCCCAAGGCGTGTACCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000176293_MULTIEX1-2/5=C1-3
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.019 A=0.021 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0135222=KRAB=PU(95.1=90.7)
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAATGGAGTTAGGCTCGCGC
R:
TACACGCCTTGGGGAAGTCTA
Band lengths:
163-290
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)