BtaEX0041100 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000003462 | ZNF135
Description
Bos taurus zinc finger protein 135 (ZNF135), mRNA. [Source:RefSeq mRNA;Acc:NM_001076816]
Coordinates
chr18:65676642-65685209:+
Coord C1 exon
chr18:65676642-65676660
Coord A exon
chr18:65679959-65680043
Coord C2 exon
chr18:65685083-65685209
Length
85 bp
Sequences
Splice sites
3' ss Seq
CATATCCCCTTTCCCTCCAGAAC
3' ss Score
10.91
5' ss Seq
CCGGTGAGT
5' ss Score
10.9
Exon sequences
Seq C1 exon
TTTGTCCTACAGTCCGGCG
Seq A exon
AACTGCCTACAGAGGAGCTGACTGTTCCTGCGAAAGGCCCGAGGAGGAGGGAATGACCGCTGGGCTCCTCACTGCCGGGGACCCG
Seq C2 exon
GACCAAGTGACTTTTGAGGATGTGGTCGTGGACTTCACCCAGGAGGAGTGGGGGCATCTGGAGCCGGCCCAGAGGACCCTGTACCGAGATGTGATGCTGGAGACCTTCGGGCTCCTGGTCTCTGTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000003462_MULTIEX1-1/4=C1-3
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.773 C2=0.023
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF0135222=KRAB=WD(100=95.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTGTCCTACAGTCCGGCG
R:
CAGAGACCAGGAGCCCGAAG
Band lengths:
143-228
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development