HsaINT0186205 @ hg19
Intron Retention
Gene
ENSG00000176293 | ZNF135
Description
zinc finger protein 135 [Source:HGNC Symbol;Acc:12919]
Coordinates
chr19:58571342-58573074:+
Coord C1 exon
chr19:58571342-58571403
Coord A exon
chr19:58571404-58572947
Coord C2 exon
chr19:58572948-58573074
Length
1544 bp
Sequences
Splice sites
5' ss Seq
CCGGTGAGA
5' ss Score
8.72
3' ss Seq
ACACTCGTGTGATGTTTCAGGAG
3' ss Score
7.89
Exon sequences
Seq C1 exon
GGCCAGCCGTTCCTGCCAGAAGCCAGGGCATGACCCCTGGGGTGCGCGTCTCCACAGACCCG
Seq A exon
GTGAGAATCTCGGCCTCCTTGCGCGTGTCCTCCACCTCGTGCCCGGCCTCCTCGCGCGCGGCCTTCTCACGCCCGGCCTCCTCTTTGCACCCCGTCCCTACTCGCGCTCAGCCTCCTCCTTGTGCCCGGCCCCTACTTGCGTGCCCGGCCCCTACTCGTGCCCGGCCTCTACTCGCACAACTGGCCTCTACTCGCGCACCTGGCCTCTACTGGTGCCCGGCCTCTACTCGTGCCCGGCCTCTATTTGCACATCTAGCCTCTACTCGTGTCCGGCCTCTACCTGCACACCCGGCCTCCTAAAGTCCGCGCCAAGCTCCCCAACCACAGCCTGCCTCTGAAAGGACCGCCCACGCCGCGCTGGAGGTCAGCGGGCACGGGTCCCTGTCTGAGTGGGCTTTATGTTTGTGCGGCCGTCATTGCATACCTGAGGCTGGGTGATGTCAGAAAATTGTAGGTGCCCCGGCTCTGCAGTCTGAAGTTGAAGGCCTTAGCATGCTCTGCGCTCCAAGATGGCGCATCGAGTGCCGCTTCCTCAGACGTCATGGAGGCCAAGGGGGCGGAACTCGCCTTTTTATGATGACATTAACCCCACCCATAAGCCACCAGAAGAAACCAGCCTCCTGTAGGAATGTCAGAAAACCCGTACAAGGGGACTGGTGCGATGGCTTGTAGCTGTAATCCCAGCTATGGGGGAGGATTGCTTGAGCCCAGGAGTTGGAGGCTGCAGTGAGCCATGATGTGCCACTGCACTCCAGCCTGAATGACAGTGGAACCCTGTCTCTAAAAAATTAAAAAACAAACCCAGATTTGGCCGGGCGCGGTGGCTCGCACCTGTAATCCCAGCACTTTGGGAGGCCGAGGTGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCGAACACGGTGAAACCCCGTCTCTACTAAAAATACAAAAAAAAATTAGCCGGGGGGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGAGAGGCTGAGGCAGGAGAATGGCGTGAACCCAGGAGGCGGAGCTTGCAGTGAGCCAAGATCATGCCACTGCACTCTAGCCTGGGCGACAAAGCGAGACTCCGTCTCGGGGGAAAAAAAAAACCACCCAGATTCAGTCTTTAGACTTCTGCTACTAGCTTTATAACTTTGTTTATCCCCTAGGCTGAAGTGCAGTGATGCAATCATGGCTCACTGTGCTTCAAACTTACGTGCTCAAGTGATCCTCCCACCTCAGCCTGTTAAGCAGCTGGGACCACGGGCATGCGACACCATGCTGGGCTGGTCCACTCCTTTATTGCTGGCTCCCTCCATTTCTTATTTCAAGAGACAAATTATTGGAAACGGGCATGATGCCTTAGATTCTAAGATCCTCCACCTCATCAGCAGGGCACCCATCCAGGCCCCACAGAAAAACCTGACCCAAAACCCCAGACCAAAGGGAACTCCATCCGACCCAGCCTGGCTGGCATTTACCAGCTACCCCACCAGCAGCCAGTGCCAGGGTTGGCTTGGCTGAGGACACTCGTGTGATGTTTCAG
Seq C2 exon
GAGCAAGTGACGTTTGAGGACGTGGTAGTGGGCTTCAGCCAGGAGGAGTGGGGGCAGCTGAAGCCTGCCCAGAGGACCCTGTACCGTGATGTAATGCTGGACACCTTCAGGCTTCTGGTCTCTGTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000176293-ZNF135:NM_003436:2
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.612 A=NA C2=0.021
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0135222=KRAB=PU(95.1=90.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGTTCCTGCCAGAAGCCAG
R:
CCACAGAGACCAGAAGCCTGA
Band lengths:
182-1726
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)