HsaEX0073084 @ hg19
Exon Skipping
Gene
ENSG00000204920 | ZNF155
Description
zinc finger protein 155 [Source:HGNC Symbol;Acc:12940]
Coordinates
chr19:44492611-44495826:+
Coord C1 exon
chr19:44492611-44492710
Coord A exon
chr19:44494176-44494264
Coord C2 exon
chr19:44495700-44495826
Length
89 bp
Sequences
Splice sites
3' ss Seq
TGATTTGTTCCCCAAATCAGATT
3' ss Score
6.84
5' ss Seq
GAGGTAGGT
5' ss Score
9.65
Exon sequences
Seq C1 exon
ACTGTGGCACGTTTCAGGCAGGATTCCTCCTTCATTCAAACTGCATCACCCAGGAGTCTGCAAATTCCCCAAAGTAGGAGGAAAAATGACCACATTCAAG
Seq A exon
ATTACCAAGACTGTGGGAATACTTATAACCTGCTCTTGGTCATGATAAAGAGAAGCAAAGTACTTGTATTCTGTTCAAAGATTATGGAG
Seq C2 exon
GAGGCAGTGACCTTCAAGGATGTGGCTGTGGTCTTCACTGAGGAGGAGCTGGGGCTGCTGGACCCTGCCCAGAGGAAGCTGTACCGAGATGTGATGCTGGAGAACTTCAGGAACCTGCTCTCAGTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000204920_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0135222=KRAB=WD(100=95.3)
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGTTTCAGGCAGGATTCCTCC
R:
TCTCGGTACAGCTTCCTCTGG
Band lengths:
180-269
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)