HsaEX0073084 @ hg38
Exon Skipping
Gene
ENSG00000204920 | ZNF155
Description
zinc finger protein 155 [Source:HGNC Symbol;Acc:HGNC:12940]
Coordinates
chr19:43989355-43991674:+
Coord C1 exon
chr19:43989355-43989455
Coord A exon
chr19:43990024-43990112
Coord C2 exon
chr19:43991548-43991674
Length
89 bp
Sequences
Splice sites
3' ss Seq
TGATTTGTTCCCCAAATCAGATT
3' ss Score
6.84
5' ss Seq
GAGGTAGGT
5' ss Score
9.65
Exon sequences
Seq C1 exon
TCCAGTGATACTAAGTTTTGCCAATCACTTGTGTTCTGTTACTACATTTACTCCTCAGCGCAGCGGAATGAGGTTCCTGGTCTCTTCTTCTTCTTGAACAG
Seq A exon
ATTACCAAGACTGTGGGAATACTTATAACCTGCTCTTGGTCATGATAAAGAGAAGCAAAGTACTTGTATTCTGTTCAAAGATTATGGAG
Seq C2 exon
GAGGCAGTGACCTTCAAGGATGTGGCTGTGGTCTTCACTGAGGAGGAGCTGGGGCTGCTGGACCCTGCCCAGAGGAAGCTGTACCGAGATGTGATGCTGGAGAACTTCAGGAACCTGCTCTCAGTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000204920-'14-18,'14-17,15-18
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. ATG)
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF0135222=KRAB=WD(100=95.3)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCCAATCACTTGTGTTCTGT
R:
TCTCGGTACAGCTTCCTCTGG
Band lengths:
172-261
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development