HsaEX0073088 @ hg19
Exon Skipping
Gene
ENSG00000170949 | ZNF160
Description
zinc finger protein 160 [Source:HGNC Symbol;Acc:12948]
Coordinates
chr19:53577393-53589574:-
Coord C1 exon
chr19:53589515-53589574
Coord A exon
chr19:53578310-53578436
Coord C2 exon
chr19:53577393-53577521
Length
127 bp
Sequences
Splice sites
3' ss Seq
AAATGTGTTTTTCATTTTAGGTA
3' ss Score
11
5' ss Seq
TGGGTGAGG
5' ss Score
6.74
Exon sequences
Seq C1 exon
GAAGAAGTCTGGAAGAAGAGGAAGAGGAAAGAAAAGGAGTCAGGGATGGCCCTTACTCAG
Seq A exon
GTACGGTTGACATTTAGGGATGTGGCCATAGAATTCTCTCAGGAGGAGTGGAAATGCCTGGACCCTGCTCAGAGGATCTTATACAGGGACGTGATGTTGGAGAACTACTGGAACCTTGTTTCTCTGG
Seq C2 exon
GACTGTGTCATTTTGATATGAATATTATCTCCATGTTGGAGGAAGGGAAAGAGCCCTGGACTGTGAAGAGCTGTGTGAAAATAGCAAGAAAACCAAGAACGCCGGAATGTGTCAAAGGCGTGGTCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000170949-'4-11,'4-10,8-11
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.143 A=0.011 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0135222=KRAB=WD(100=95.3)
C2:
PF0135222=KRAB=PD(0.1=0.0)
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAGTCTGGAAGAAGAGGAAGAGG
R:
CTGTGACCACGCCTTTGACAC
Band lengths:
186-313
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)