HsaEX0073090 @ hg19
Exon Skipping
Gene
ENSG00000170949 | ZNF160
Description
zinc finger protein 160 [Source:HGNC Symbol;Acc:12948]
Coordinates
chr19:53589515-53594973:-
Coord C1 exon
chr19:53594890-53594973
Coord A exon
chr19:53594666-53594782
Coord C2 exon
chr19:53589515-53589574
Length
117 bp
Sequences
Splice sites
3' ss Seq
CCGCCCACTTCATCCCTCAGGCA
3' ss Score
7.54
5' ss Seq
CACGTGAGT
5' ss Score
9.3
Exon sequences
Seq C1 exon
AAACGTTCCTGGATCCGAACACTGCCCCCTGACGACCTAGAGAGATCCCGGCTCCCAGCCCACTGAGTGGCTTCAGCCTCGCTG
Seq A exon
GCACCTCCCAACTCCTGGCCTCTCTGCACGAGGCGCCTGCCCCGGGCCCCGCCTACAGGGGACCCAGCTCTTCTTGCAGCCACTGGAAGCTGATCACCTGGAGTGAAGACCTCACAC
Seq C2 exon
GAAGAAGTCTGGAAGAAGAGGAAGAGGAAAGAAAAGGAGTCAGGGATGGCCCTTACTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000170949_MULTIEX1-1/4=C1-2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.143
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGTTCCTGGATCCGAACACTG
R:
GGCCATCCCTGACTCCTTTTC
Band lengths:
132-249
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)