HsaINT0186280 @ hg19
Intron Retention
Gene
ENSG00000170949 | ZNF160
Description
zinc finger protein 160 [Source:HGNC Symbol;Acc:12948]
Coordinates
chr19:53589515-53594750:-
Coord C1 exon
chr19:53594666-53594750
Coord A exon
chr19:53589575-53594665
Coord C2 exon
chr19:53589515-53589574
Length
5091 bp
Sequences
Splice sites
5' ss Seq
CACGTGAGT
5' ss Score
9.3
3' ss Seq
ACTCTTTTATGTTACCCAAGGAA
3' ss Score
4
Exon sequences
Seq C1 exon
GCGCCTGCCCCGGGCCCCGCCTACAGGGGACCCAGCTCTTCTTGCAGCCACTGGAAGCTGATCACCTGGAGTGAAGACCTCACAC
Seq A exon
GTGAGTTTCCCTCTGTTTAGGTTAAACTTGGGCTTCCCAGGCTCCTGCACATCCAGACTCGATTTGCAGGAGTCCTCAGAGACATATGTGTATATATGAGTGATTGTAGTTCACTGCAGCCTGGACCTCCTGGGCTCAAGCGATCCTCCCACCTCAGCCTCCTGAGTAGCTGGGACCACCGGTGTGTACCACCACCACGTTTAAATAATTTTTTTTATATATATTTAGTAGAGAGGAAGTCTCACTGTGTTGCCTGAGCTGGTCTCGAATTTGTGGGCTCAAGTGATCCTCCCGCTTCGGCTGGGATTACAGCCCACGAAGTGCTGGGATTACAGGCATGAGCCGTCACTCCGGACCCTATAGACCTTAGTATCCCCTCATGGCTCTTTCATTCCCAAGTAAATTCAGAGGTGTCCATGAGAGGTCAGGGGTCACTTCCCATTGAACCACACAGACAGGTCCTGCTTGCAGTATTTCTGCCTTCAGCCCATGTAGAGAGCTTTCATGCCATTTCCTGCTTAAAACCCTTTACTCACTTCCCACCCTGTGCCTTGTAAGGTCCTCACCCGCGAGGTGCATTCACCCTTTGGGTCCCCTAAGCCTCGCCCTTCATTGCGTCTGCACAGCAGCACCGCAGCTCCGGTGCAAGAGAGTCCTCGCCCTGGTCCTGGGATTCCACAGATCCCACCCCTCCCCTGAGACACCCTCCCATCTTGCTCTCATTGAGCCTTGCCCTCTATCCTGCAGGCCTCCCCCTCATAAGCATGGCTTCCTCTGACCCAGCGTTGAAGGAGGTGACTTGGGCCTGTCTGTTCACCTCCAATGTTCTTTTGTCCCAGATTCCACTCCACTAGGAAAAGTGCTTTCAGTAGGTGGGCATCTTATTCCATCCCCTTCCCTGTAAATATGTGGCCACAGGGGATCAGGAGAAAGAGAGACAGGAGAAAGAGGAAATAGAAAAACTGAGAAGGAGTGAGAAGGACGGGTGAGAACCATGAACAGATGGCAACGCAGAGGATGGGTGGGGAATTTGCAGACAGACACTGAGAGTGAAAGACAAAGCTGAGAAAGTGTGGGGCAGGGAGCAACTGGAGAAATATAGAGAAAAGCTGGGTCTCCAGAGAGATGAAGGACAGCAAGATAGGGAGAGGGGCAGAAAGGGGGAGGCTCCTCAGACAGAGAGTGGGGGAGAGGAGGAGGAATTTGGAGTCAGGGCAGACAGCAATGTGGTGCTGGGACAGCAAGACGGGACAGCTGGTGACAAGGAGAGCAGAGGGAGAACCACAGTATGGGAAGGCTTTGGATCTGGGGGTGCCAGAGAGTGGGGACAAGGGGTGTAACAGGGAAGAGGGGATTTAATAGGGGGAGCAGAGGGGGAGCAAAGATGAGGGAAGAAAGAGGCAGAAATATGTGGAGATTGGGATTGGGACAATGAAAAGTTTGGGCAGAAAGGAATAAGAGGTGGAAGAAGTTGTAGGAATGGAGCAGAACAGGGGGAAGAGAAGGAATGGAGGGAAGAAGGGGAGAAAGAGCAGGAGAGGAGAGGGGCTCAAAATGAGGAGCAGAAACCTGGGGGGAAACATCGGAAAAAAAGAGCCAGGGAGGGAAGGTGAGGATGAGATATGTACAGAATGAGAGAGGGAAACACACAGGAAGGAAGAAGGAGGGGACCTTGGTTCAGGTGAGTGGTGAGTTGATTGAATATGGGTAATTTAGTTGTGACATGTTGATTTCTGTCTTTATAATCTAACAGATTTTAAATATGCTTAAAATACACAGATAAAGATGAGAATTGCAAAACTTGTCTATAAGGCTATGCATTTTATAATTATGGCATCAGAGGTTAGCTTCCACTTGTAACCTTTTCAGCCAGAGGGCAGTGACTTGACTCATTCATTTGTGGGCCACGCTCTTCCTCCATTTCCCTGGGATGGGGTTGGGTAGGGGCGAGAACATGAGTTAATGTAATACTGATTACATAATATTTAGTATTATATGATGCTGATTATAGTCAATATAATAGTGTACAGTCAATGTAATAGTGAACACTCCACACAGAAAACTCATCACCAAAATGTGGAGGAACTTCTTCCCACCAGCAATGCATTTTCCATCCGACACTAACTGGGTGAACTTATACTTCAACTCAATTCTGACACTGTCCAGCTAGAATTAGGATCAGATGCTGTTTACTGGTTGGTCAGTTCCACAGGGCTACCCCCACTTCAAATGCCGGTCACAAGTTGCAGGTTGGGACCTGAACTTCTGGGCGACCAACTGTAAATTGGGGATTCACTTGACCCCCCTCCTCAGGTTGTAGTAATTTGCCACGGTCATTCACCGAACTCAGGACAACACTTAGTTTACTCATTTATTATAAAGTATGTTGCAAAGGACACAGATGAACAGCCAGATGGAAAAGCTGTGCTAGCTAGTTATTCAAACCCAAGGAAAGTGTTAGGGAAGCACATTGACCAGGTCAGTCAGAGCGTACAGCATATGAAGTGAGGGCAGTCCTGTGCGACTGAACCCTCAAGCTGTGGTGTCTGATTCTGTTTTGTAGACGGTGTCAGAATTGAGTAAAACAGCAGGACTCCCTACCTGGGAGTCTGCTGGAGAAGCTGTCATTGTGGGGACAATGACACACATTTTGGTGACTAGAGGTGAAATATTCTGTGTTAGAGTGTCAGAGTAGTATGAACAATTTTTTTCCTCTCTGAACAGATCTCCAATGCATGATAAAGCCTTTTTTTCTTCTACTCTTCCATCTTTAAGACAAAAAAATACTTTCAACTACATTTCCCTCTGTAATAAGTACCTATTTGTGCTCTATTTAAGAGCATAATATTCTAAAAACTAGTTTTACTTTGTCTTCAATTCTTTTTTTTTTTTTAAATAAAAATATAGAGACAGGATCTTGCTGTGTTGGCCAGGCTGGTCTCAAACTCCTGGGCTCAAGTAGTCTTTCCACCTCAACCTCCCAAAGTACTGGGATTACAAGCGTGAGCCGTGTGCGGCCACTTTGTCTTCAATTATTGCTTAAACCTTTGAATTGTTGCTTGAATCTAGCTTTCACATCCAGCATTCCACTGATTCTTCCTTTTTCAGTCATCAGTGACCTCCCAATTCCTAAATGCCGTAATTCATGTCCTGTCCTCATCTTTTTCTTCCTGTCGGTAGCATGTAGCACAGCTGATCACTTCCTCTTCTGTTATCTTGGCTTTTATGACACCCCGTTAACCTTTACAAATCTATTCAATCTTCTTGCCACTCTGATCACTTTCTGCTTTCCTCTTCTGGTGTCTCCAGAACTTTCTTGTTCTCTGAATGTGCAAGTGCTCATGGCTCAGTCCTTACACCTCTTCTTGTCTCCGTCCACACCCACTGCCTTTCCGTACTTCTCATCTCATGGCTTTATGCCCCACCTGTTAATACTCAGCCCCATGTACCCTGCAGACCCTCCTCTGAGGTCTAGAATCCTGTGTCTAGTTGTCTCCAAAACTCTCTACAGGGATGTCCCAACAGGCATCTCCATTTTCATATGCCTAAAAGTGACTTCTTGGCTGGGCACAGTGGCTCATGCCTATAATCCCAGCACTTTGGGAGGCCGAGGCAGGCGGATCACCTGAGGCCAGGAGTTTGAGACCAGCCTGGCCAACATGGCGAAACCCTATCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTGGCGGGCGCCTGTAATCCCAGCTACTCAGGAGGCTGAGGCAGGAGAATCGCTTGAACCCAGGAGGCGGAGGCTGCAGTGAGCCGAGATCACGCTACTGCACTCCAGCCTGGGCAACAAGAGTGAAACTCTCTCAAAAATTAATTAATTAATTATTTAAATAAAAGTGACTTCCCAAACTCCTCCAAACATATTCACCCCTGCAGTCTTGCACATCTCAGCTAAGGGCAACCCTGTACTTCCTGGGGCTCAGCTGAACTTCTTGTCATGTTTAAAATATGCAAGATACTATGTTGTAAGTGTGTTACTTTGTAAAATGAAGAAAAAATTAAGCATTTACTTAAAACAGGTGAGGAAATACATGGTTTCATAAATTTTTTTGACGTATGGGAGAAAGAATGTTTGAAGACCTCTCCCTGCGTGATCTGCACCCTCAGGACCTCTCAGACGCCATCTCCTTCCTGTGTCCTCCCAGCCCCCTCTGCTCCAGTCACACAGGCCCCTTTCCTTTTCCTGGAGCCAAGGTTGCTCCTGCCTCAAGGCTTCCATGTGGGCTGGCCCTCTGCCTAGAACTCCCTGGCCTCTCAGCTGCAAGTGACAAGCAGCCTTTCTTCCTGAGGTCTTTGTTCTGACATCACTTCCTCCGTGGAAACGTTTGTGATCTCCCACAGCCTCCTATTTGACATTGCAGGCCCACCTTCACCCCCACCTCTGGTCCATGTTGCCTGTTCTGTGTGATTCTTTTTGCTCCTTCAATATCCAGTCTGGATCCTGGTGAGAACAAGTCCCCAACAGGAGAGCAGAGCCAGAAGGTGGGGCTGTGCTGGGCTCACCCCCTCAGTGGAGCTCAACCCTGGCTTCATATTAGAGTGCCTAGGCGTTTTGCAGAAACATCTCTTGTGCCCCCTTGACGTATTTTCATTTCAGTGTTTTAGAGCCCAGCTGAGTAATATTTAAAGTTGACTCTATTCTGTAGCCAGCATAGTACCAATCACTGTCTTTTGTTTCTGAAGGCTGAGCTCAGCCTGGGATCCACAGAGAGGTGAGGGGGGCTGTGTTCTGCATGGGGTTTGGTCAGGGCTGGGTCTGTGTCCTAAAGGGGAGCTCAGTCCAGCCCAGCTCCCCACTGCTGCAGTGTGTGTGGGCTTCTCCAGGAGGAAGGTGGGTTCTGAAGAAAGGGGTCAGAAACTCACTTCTTCCTGTAGGAGTTTCTCGTCCCCGTATTCCCCCTGGTGCAGTGGGGCGCAGAGGACCATCTTTCCACAGGGTGAGATCTGTGCGTGTGACTGTGGCACATGAAGGGGATGTATAGATTCTCAGCCCTAAGCAGCATATTTTGGATATTCAGTATTGACTTCTAAAGACTCTTTTATGTTACCCAAG
Seq C2 exon
GAAGAAGTCTGGAAGAAGAGGAAGAGGAAAGAAAAGGAGTCAGGGATGGCCCTTACTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000170949-ZNF160:NM_198893:3
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.143
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)