HsaINT0186280 @ hg38
Intron Retention
Gene
ENSG00000170949 | ZNF160
Description
zinc finger protein 160 [Source:HGNC Symbol;Acc:HGNC:12948]
Coordinates
chr19:53086262-53091497:-
Coord C1 exon
chr19:53091413-53091497
Coord A exon
chr19:53086322-53091412
Coord C2 exon
chr19:53086262-53086321
Length
5091 bp
Sequences
Splice sites
5' ss Seq
CACGTGAGT
5' ss Score
9.3
3' ss Seq
ACTCTTTTATGTTACCCAAGGAA
3' ss Score
4
Exon sequences
Seq C1 exon
GCGCCTGCCCCGGGCCCCGCCTACAGGGGACCCAGCTCTTCTTGCAGCCACTGGAAGCTGATCACCTGGAGTGAAGACCTCACAC
Seq A exon
GTGAGTTTCCCTCTGTTTAGGTTAAACTTGGGCTTCCCAGGCTCCTGCACATCCAGACTCGATTTGCAGGAGTCCTCAGAGACATATGTGTATATATGAGTGATTGTAGTTCACTGCAGCCTGGACCTCCTGGGCTCAAGCGATCCTCCCACCTCAGCCTCCTGAGTAGCTGGGACCACCGGTGTGTACCACCACCACGTTTAAATAATTTTTTTTATATATATTTAGTAGAGAGGAAGTCTCACTGTGTTGCCTGAGCTGGTCTCGAATTTGTGGGCTCAAGTGATCCTCCCGCTTCGGCTGGGATTACAGCCCACGAAGTGCTGGGATTACAGGCATGAGCCGTCACTCCGGACCCTATAGACCTTAGTATCCCCTCATGGCTCTTTCATTCCCAAGTAAATTCAGAGGTGTCCATGAGAGGTCAGGGGTCACTTCCCATTGAACCACACAGACAGGTCCTGCTTGCAGTATTTCTGCCTTCAGCCCATGTAGAGAGCTTTCATGCCATTTCCTGCTTAAAACCCTTTACTCACTTCCCACCCTGTGCCTTGTAAGGTCCTCACCCGCGAGGTGCATTCACCCTTTGGGTCCCCTAAGCCTCGCCCTTCATTGCGTCTGCACAGCAGCACCGCAGCTCCGGTGCAAGAGAGTCCTCGCCCTGGTCCTGGGATTCCACAGATCCCACCCCTCCCCTGAGACACCCTCCCATCTTGCTCTCATTGAGCCTTGCCCTCTATCCTGCAGGCCTCCCCCTCATAAGCATGGCTTCCTCTGACCCAGCGTTGAAGGAGGTGACTTGGGCCTGTCTGTTCACCTCCAATGTTCTTTTGTCCCAGATTCCACTCCACTAGGAAAAGTGCTTTCAGTAGGTGGGCATCTTATTCCATCCCCTTCCCTGTAAATATGTGGCCACAGGGGATCAGGAGAAAGAGAGACAGGAGAAAGAGGAAATAGAAAAACTGAGAAGGAGTGAGAAGGACGGGTGAGAACCATGAACAGATGGCAACGCAGAGGATGGGTGGGGAATTTGCAGACAGACACTGAGAGTGAAAGACAAAGCTGAGAAAGTGTGGGGCAGGGAGCAACTGGAGAAATATAGAGAAAAGCTGGGTCTCCAGAGAGATGAAGGACAGCAAGATAGGGAGAGGGGCAGAAAGGGGGAGGCTCCTCAGACAGAGAGTGGGGGAGAGGAGGAGGAATTTGGAGTCAGGGCAGACAGCAATGTGGTGCTGGGACAGCAAGACGGGACAGCTGGTGACAAGGAGAGCAGAGGGAGAACCACAGTATGGGAAGGCTTTGGATCTGGGGGTGCCAGAGAGTGGGGACAAGGGGTGTAACAGGGAAGAGGGGATTTAATAGGGGGAGCAGAGGGGGAGCAAAGATGAGGGAAGAAAGAGGCAGAAATATGTGGAGATTGGGATTGGGACAATGAAAAGTTTGGGCAGAAAGGAATAAGAGGTGGAAGAAGTTGTAGGAATGGAGCAGAACAGGGGGAAGAGAAGGAATGGAGGGAAGAAGGGGAGAAAGAGCAGGAGAGGAGAGGGGCTCAAAATGAGGAGCAGAAACCTGGGGGGAAACATCGGAAAAAAAGAGCCAGGGAGGGAAGGTGAGGATGAGATATGTACAGAATGAGAGAGGGAAACACACAGGAAGGAAGAAGGAGGGGACCTTGGTTCAGGTGAGTGGTGAGTTGATTGAATATGGGTAATTTAGTTGTGACATGTTGATTTCTGTCTTTATAATCTAACAGATTTTAAATATGCTTAAAATACACAGATAAAGATGAGAATTGCAAAACTTGTCTATAAGGCTATGCATTTTATAATTATGGCATCAGAGGTTAGCTTCCACTTGTAACCTTTTCAGCCAGAGGGCAGTGACTTGACTCATTCATTTGTGGGCCACGCTCTTCCTCCATTTCCCTGGGATGGGGTTGGGTAGGGGCGAGAACATGAGTTAATGTAATACTGATTACATAATATTTAGTATTATATGATGCTGATTATAGTCAATATAATAGTGTACAGTCAATGTAATAGTGAACACTCCACACAGAAAACTCATCACCAAAATGTGGAGGAACTTCTTCCCACCAGCAATGCATTTTCCATCCGACACTAACTGGGTGAACTTATACTTCAACTCAATTCTGACACTGTCCAGCTAGAATTAGGATCAGATGCTGTTTACTGGTTGGTCAGTTCCACAGGGCTACCCCCACTTCAAATGCCGGTCACAAGTTGCAGGTTGGGACCTGAACTTCTGGGCGACCAACTGTAAATTGGGGATTCACTTGACCCCCCTCCTCAGGTTGTAGTAATTTGCCACGGTCATTCACCGAACTCAGGACAACACTTAGTTTACTCATTTATTATAAAGTATGTTGCAAAGGACACAGATGAACAGCCAGATGGAAAAGCTGTGCTAGCTAGTTATTCAAACCCAAGGAAAGTGTTAGGGAAGCACATTGACCAGGTCAGTCAGAGCGTACAGCATATGAAGTGAGGGCAGTCCTGTGCGACTGAACCCTCAAGCTGTGGTGTCTGATTCTGTTTTGTAGACGGTGTCAGAATTGAGTAAAACAGCAGGACTCCCTACCTGGGAGTCTGCTGGAGAAGCTGTCATTGTGGGGACAATGACACACATTTTGGTGACTAGAGGTGAAATATTCTGTGTTAGAGTGTCAGAGTAGTATGAACAATTTTTTTCCTCTCTGAACAGATCTCCAATGCATGATAAAGCCTTTTTTTCTTCTACTCTTCCATCTTTAAGACAAAAAAATACTTTCAACTACATTTCCCTCTGTAATAAGTACCTATTTGTGCTCTATTTAAGAGCATAATATTCTAAAAACTAGTTTTACTTTGTCTTCAATTCTTTTTTTTTTTTTAAATAAAAATATAGAGACAGGATCTTGCTGTGTTGGCCAGGCTGGTCTCAAACTCCTGGGCTCAAGTAGTCTTTCCACCTCAACCTCCCAAAGTACTGGGATTACAAGCGTGAGCCGTGTGCGGCCACTTTGTCTTCAATTATTGCTTAAACCTTTGAATTGTTGCTTGAATCTAGCTTTCACATCCAGCATTCCACTGATTCTTCCTTTTTCAGTCATCAGTGACCTCCCAATTCCTAAATGCCGTAATTCATGTCCTGTCCTCATCTTTTTCTTCCTGTCGGTAGCATGTAGCACAGCTGATCACTTCCTCTTCTGTTATCTTGGCTTTTATGACACCCCGTTAACCTTTACAAATCTATTCAATCTTCTTGCCACTCTGATCACTTTCTGCTTTCCTCTTCTGGTGTCTCCAGAACTTTCTTGTTCTCTGAATGTGCAAGTGCTCATGGCTCAGTCCTTACACCTCTTCTTGTCTCCGTCCACACCCACTGCCTTTCCGTACTTCTCATCTCATGGCTTTATGCCCCACCTGTTAATACTCAGCCCCATGTACCCTGCAGACCCTCCTCTGAGGTCTAGAATCCTGTGTCTAGTTGTCTCCAAAACTCTCTACAGGGATGTCCCAACAGGCATCTCCATTTTCATATGCCTAAAAGTGACTTCTTGGCTGGGCACAGTGGCTCATGCCTATAATCCCAGCACTTTGGGAGGCCGAGGCAGGCGGATCACCTGAGGCCAGGAGTTTGAGACCAGCCTGGCCAACATGGCGAAACCCTATCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTGGCGGGCGCCTGTAATCCCAGCTACTCAGGAGGCTGAGGCAGGAGAATCGCTTGAACCCAGGAGGCGGAGGCTGCAGTGAGCCGAGATCACGCTACTGCACTCCAGCCTGGGCAACAAGAGTGAAACTCTCTCAAAAATTAATTAATTAATTATTTAAATAAAAGTGACTTCCCAAACTCCTCCAAACATATTCACCCCTGCAGTCTTGCACATCTCAGCTAAGGGCAACCCTGTACTTCCTGGGGCTCAGCTGAACTTCTTGTCATGTTTAAAATATGCAAGATACTATGTTGTAAGTGTGTTACTTTGTAAAATGAAGAAAAAATTAAGCATTTACTTAAAACAGGTGAGGAAATACATGGTTTCATAAATTTTTTTGACGTATGGGAGAAAGAATGTTTGAAGACCTCTCCCTGCGTGATCTGCACCCTCAGGACCTCTCAGACGCCATCTCCTTCCTGTGTCCTCCCAGCCCCCTCTGCTCCAGTCACACAGGCCCCTTTCCTTTTCCTGGAGCCAAGGTTGCTCCTGCCTCAAGGCTTCCATGTGGGCTGGCCCTCTGCCTAGAACTCCCTGGCCTCTCAGCTGCAAGTGACAAGCAGCCTTTCTTCCTGAGGTCTTTGTTCTGACATCACTTCCTCCGTGGAAACGTTTGTGATCTCCCACAGCCTCCTATTTGACATTGCAGGCCCACCTTCACCCCCACCTCTGGTCCATGTTGCCTGTTCTGTGTGATTCTTTTTGCTCCTTCAATATCCAGTCTGGATCCTGGTGAGAACAAGTCCCCAACAGGAGAGCAGAGCCAGAAGGTGGGGCTGTGCTGGGCTCACCCCCTCAGTGGAGCTCAACCCTGGCTTCATATTAGAGTGCCTAGGCGTTTTGCAGAAACATCTCTTGTGCCCCCTTGACGTATTTTCATTTCAGTGTTTTAGAGCCCAGCTGAGTAATATTTAAAGTTGACTCTATTCTGTAGCCAGCATAGTACCAATCACTGTCTTTTGTTTCTGAAGGCTGAGCTCAGCCTGGGATCCACAGAGAGGTGAGGGGGGCTGTGTTCTGCATGGGGTTTGGTCAGGGCTGGGTCTGTGTCCTAAAGGGGAGCTCAGTCCAGCCCAGCTCCCCACTGCTGCAGTGTGTGTGGGCTTCTCCAGGAGGAAGGTGGGTTCTGAAGAAAGGGGTCAGAAACTCACTTCTTCCTGTAGGAGTTTCTCGTCCCCGTATTCCCCCTGGTGCAGTGGGGCGCAGAGGACCATCTTTCCACAGGGTGAGATCTGTGCGTGTGACTGTGGCACATGAAGGGGATGTATAGATTCTCAGCCCTAAGCAGCATATTTTGGATATTCAGTATTGACTTCTAAAGACTCTTTTATGTTACCCAAG
Seq C2 exon
GAAGAAGTCTGGAAGAAGAGGAAGAGGAAAGAAAAGGAGTCAGGGATGGCCCTTACTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000170949:ENST00000599056:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.100
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains