HsaEX0073092 @ hg38
Exon Skipping
Gene
ENSG00000170949 | ZNF160
Description
zinc finger protein 160 [Source:HGNC Symbol;Acc:HGNC:12948]
Coordinates
chr19:53075057-53086321:-
Coord C1 exon
chr19:53086262-53086321
Coord A exon
chr19:53085809-53086109
Coord C2 exon
chr19:53075057-53075183
Length
301 bp
Sequences
Splice sites
3' ss Seq
GTCCCTCTCATCTCGTTTAGATT
3' ss Score
9.2
5' ss Seq
CAAGTGAGT
5' ss Score
9.1
Exon sequences
Seq C1 exon
GAAGAAGTCTGGAAGAAGAGGAAGAGGAAAGAAAAGGAGTCAGGGATGGCCCTTACTCAG
Seq A exon
ATTCCATCTCCCGTGATCCAGTGACATGAACTTGGGAAGAGGCTGCACTGGGCATGGTCCTGGGAAGGGCTCACACCCAGACATGGATGGAGACGGGGTGAGGGTCCTGTGGTGTCAGTGCTGTTGGGCAGCAGGGATTGCTCAGGGGCCGCATCTGGATGCACTGTCAGCGCTGTGTAAACCATGATAACAGAAGCTGCCCATGAAGTCAGGTGCACACGTACCTGCTCACTGGCATAGAAAAGAACACTAAGGGGAAAGCTTTCCTGCCTCATTGGTAACTGCATTTGAAGCCGAACAA
Seq C2 exon
GTACGGTTGACATTTAGGGATGTGGCCATAGAATTCTCTCAGGAGGAGTGGAAATGCCTGGACCCTGCTCAGAGGATCTTATACAGGGACGTGATGTTGGAGAACTACTGGAACCTTGTTTCTCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000170949_MULTIEX1-1/3=C1-3
Average complexity
C1*
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=0.100 A=0.000 C2=0.009
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0135222=KRAB=WD(100=95.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTCTGGAAGAAGAGGAAGAGGA
R:
CCAGAGAAACAAGGTTCCAGT
Band lengths:
182-483
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development