HsaEX0073115 @ hg19
Exon Skipping
Gene
ENSG00000167384 | ZNF180
Description
zinc finger protein 180 [Source:HGNC Symbol;Acc:12970]
Coordinates
chr19:44988572-45001424:-
Coord C1 exon
chr19:45001336-45001424
Coord A exon
chr19:45000609-45000726
Coord C2 exon
chr19:44988572-44988646
Length
118 bp
Sequences
Splice sites
3' ss Seq
TTTTTTTTTTTTTGAGACAGAGT
3' ss Score
3.01
5' ss Seq
CAGGTGGGC
5' ss Score
8.07
Exon sequences
Seq C1 exon
CTCAGGACCTCAGCACCCTGCTGTGCCTGGAGGAGAGCATGGAAGAGCAGGATGAGAAGCCCCCAGAGCCCCCGAAGGCCTGTGCACAG
Seq A exon
AGTCTTGCTCTGTCATCCAGGTTGGAGTGCAGTGACACAATCCTAGCTCACTGCCGCCTCAAACTTCTGGGCTCAAGCCATCCTCCTGCCTCAGCCGCCTGAATAGGTGGGACTACAG
Seq C2 exon
GATTCTTTCCTTCCTCAAGAGATTATCATCAAAGTCGAGGGAGAAGACACTGGGTCTCTGACCATCCCATCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000167384_MULTIEX1-2/6=1-5
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.885 A=0.152 C2=0.360
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCAGGACCTCAGCACCCTG
R:
CTGAGATGGGATGGTCAGAGAC
Band lengths:
164-282
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)