HsaEX0073115 @ hg38
Exon Skipping
Gene
ENSG00000167384 | ZNF180
Description
zinc finger protein 180 [Source:HGNC Symbol;Acc:HGNC:12970]
Coordinates
chr19:44484361-44497372:-
Coord C1 exon
chr19:44497284-44497372
Coord A exon
chr19:44496548-44496665
Coord C2 exon
chr19:44484361-44484435
Length
118 bp
Sequences
Splice sites
3' ss Seq
TTTTTTTTTTTTTGAGACAGAGT
3' ss Score
3.01
5' ss Seq
CAGGTGGGC
5' ss Score
8.07
Exon sequences
Seq C1 exon
CTCAGGACCTCAGCACCCTGCTGTGCCTGGAGGAGAGCATGGAAGAGCAGGATGAGAAGCCCCCAGAGCCCCCGAAGGTCTGTGCACAG
Seq A exon
AGTCTTGCTCTGTCGTCCAGGTTGGAGTGCAGTGACACAATCCTAGCTCACTGCCGCCTCAAACTTCTGGGCTCAAGCCATCCTCCTGCCTCAGCCGCCTGAATAGGTGGGACTACAG
Seq C2 exon
GATTCTTTCCTTCCTCAAGAGATTATCATCAAAGTCGAGGGAGAAGACACTGGGTCTCTGACCATCCCATCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000167384_MULTIEX1-2/8=1-6
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.772 A=0.152 C2=0.425
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCAGGACCTCAGCACCCTG
R:
CTGAGATGGGATGGTCAGAGAC
Band lengths:
164-282
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development