MmuEX0053060 @ mm9
Exon Skipping
Gene
ENSMUSG00000057101 | Zfp180
Description
zinc finger protein 180 [Source:MGI Symbol;Acc:MGI:1923701]
Coordinates
chr7:24870445-24882914:+
Coord C1 exon
chr7:24870445-24870525
Coord A exon
chr7:24871507-24871610
Coord C2 exon
chr7:24882840-24882914
Length
104 bp
Sequences
Splice sites
3' ss Seq
TATATGTTTCATCTCCCCAGGAA
3' ss Score
10.46
5' ss Seq
CAGGTATGC
5' ss Score
9.37
Exon sequences
Seq C1 exon
CTTGGCACCACGCCACACCTGGAGGAGACCATGGAGCAACAAGATGATGAGTCCCTGGAGTCCCTGCAGGCCTGTGTGGAG
Seq A exon
GAAGAGTCTATCACACACCAAAGGCTAGCATTTCCCCTGATAAGCTGGAAGCCAGTAGGTCCTAGTGATTCTCTGCTCTCTGCCCCTCTGAGCTGGGGCTACAG
Seq C2 exon
AACTTTGTTCTACCCCAAGAGATGATCATTGAAGTGGAGGGAGAAGATGCTGGGTCACTGGACATCATGCCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000057101_MULTIEX1-2/4=1-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.765 A=0.000 C2=0.394
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg19)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACGCCACACCTGGAGGAG
R:
GAGGCATGATGTCCAGTGACC
Band lengths:
146-250
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: