MmuEX0053059 @ mm9
Exon Skipping
Gene
ENSMUSG00000057101 | Zfp180
Description
zinc finger protein 180 [Source:MGI Symbol;Acc:MGI:1923701]
Coordinates
chr7:24866943-24882914:+
Coord C1 exon
chr7:24866943-24867257
Coord A exon
chr7:24870445-24870525
Coord C2 exon
chr7:24882840-24882914
Length
81 bp
Sequences
Splice sites
3' ss Seq
AGCTGCTTTTATTTATGCAGCTT
3' ss Score
6.14
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
Exon sequences
Seq C1 exon
GGCAGTGCAGCCATTTGTGTGAGTGTGTGTGTGTGTTTGTATGTGTTTGTGTGTGTGCGTGCGTGCGTGTGAGTGTGTGTGTGTGTATGTGTGTGAAGGCGTCTTCTATGGCTCAGCTTTGTGGCTGGGCTCAGTCTACACGGAGCGACCTGGCGGATGCTGACTCGAAGTGGAAGCCAGACCCCCGCCACTCGAGTCATGCCGGGTGTGCTTCAGGATCGGGGCAGGAAGCGGTGAGCACAGTTTCGTTCTGACGCTGAGTCGTGAGTGGCTCAGACCCGCCCCGGTCCTCACCACGGGCTCACGGACGTCCAG
Seq A exon
CTTGGCACCACGCCACACCTGGAGGAGACCATGGAGCAACAAGATGATGAGTCCCTGGAGTCCCTGCAGGCCTGTGTGGAG
Seq C2 exon
AACTTTGTTCTACCCCAAGAGATGATCATTGAAGTGGAGGGAGAAGATGCTGGGTCACTGGACATCATGCCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000057101_MULTIEX1-1/4=C1-3
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.765 C2=0.394
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTCAGGATCGGGGCAGGAAG
R:
CATGATGTCCAGTGACCCAGC
Band lengths:
174-255
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: