HsaEX0073114 @ hg19
Exon Skipping
Gene
ENSG00000167384 | ZNF180
Description
zinc finger protein 180 [Source:HGNC Symbol;Acc:12970]
Coordinates
chr19:44988572-45004574:-
Coord C1 exon
chr19:45004250-45004574
Coord A exon
chr19:45001336-45001429
Coord C2 exon
chr19:44988572-44988646
Length
94 bp
Sequences
Splice sites
3' ss Seq
GTACTTGGGGCTTCTCTCAGTGC
3' ss Score
4.45
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
ACAAGAGCAGCCATTGTCCCGCGCGCGGACGCTTGCTGTCGCCGAGCAGCTCGGCCCTTCAGACTTAACCCCCAGCGGCCTTGCGGATGCTGACTAGGAGAGGGGACCGAACTAGCTTAACCCGAGTCGGCCGTGTTGCAGAATCGGGGCAGGGGGTTGCCTAACCCGAGTTCGTCCTGCCGCAGAGCCGTGCTAGGCACTGAGGCGGTGACAGGCCCAGCCTGGGCTGCGGGCCAGCGGACGCCCAGGTTGGTAGGGGCGTGGGGCAGCGCTTGGTGTCCGATGCGCGCATGCGCAGGGTCTACGCGGGAAGCTGGAAGCGGTG
Seq A exon
TGCAGCTCAGGACCTCAGCACCCTGCTGTGCCTGGAGGAGAGCATGGAAGAGCAGGATGAGAAGCCCCCAGAGCCCCCGAAGGCCTGTGCACAG
Seq C2 exon
GATTCTTTCCTTCCTCAAGAGATTATCATCAAAGTCGAGGGAGAAGACACTGGGTCTCTGACCATCCCATCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000167384_MULTIEX1-1/6=C1-5
Average complexity
C1*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.542 A=0.782 C2=0.360
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCACTGAGGCGGTGACAG
R:
CCAGTGTCTTCTCCCTCGACT
Band lengths:
182-276
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)